Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L04
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    31   0.40 
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    28   2.1  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    27   3.7  
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    27   3.7  
At1g14700.1 68414.m01757 purple acid phosphatase, putative conta...    27   4.9  
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop...    27   6.5  
At5g45520.1 68418.m05591 hypothetical protein                          26   8.6  
At4g24150.1 68417.m03465 expressed protein ; expression supporte...    26   8.6  
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R...    26   8.6  

>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 142 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPLARGG 291
           ++A P P+   P+ GP     P+S+ PA       N+P   Y  P   GG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 154 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDNPLAR 285
           P P  S P N P    ++ P  + P+   +N P  PP  YD P  R
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPGGR 402


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 175 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDNP 276
           PS+ PS ++ P  TGP+   + HP ++ P   D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 14  SDTIRQ*KLSCFSSSPYWPWLP 79
           S  I + + SC  SSP+ PW+P
Sbjct: 96  SKIIEEKRYSCIISSPFTPWVP 117


>At1g14700.1 68414.m01757 purple acid phosphatase, putative contains
           Pfam profile: PF00149 calcineurin-like phosphoesterase;
           similar to purple acid phosphatase (GI:20257479)
           [Arabidopsis thaliana]
          Length = 366

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 120 RWNTTIVHHVNSVCGSHGQYGEEEKH 43
           +W   I HH     G HG   E EKH
Sbjct: 239 KWKIVIGHHTIKSAGHHGNTIELEKH 264


>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 511

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 336 FLLVLKSLIFMRHLLPTTGERVVVSLGWIIGMIEIDERRSSAYGFIIS 193
           F  +LK+L FM HL     E+V V   WI  +    +    +Y F IS
Sbjct: 462 FAPILKNLPFMEHLWRHFAEQVKVHHKWIDHLQPSSQSCFLSYRFYIS 509


>At5g45520.1 68418.m05591 hypothetical protein
          Length = 1167

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 328 SFKIAYLYETFTSHHGREGCRIAW 257
           SFK+  L E+ T   G E  +IAW
Sbjct: 524 SFKVESLMESLTGLQGLESLKIAW 547


>At4g24150.1 68417.m03465 expressed protein ; expression supported
           by MPSS
          Length = 493

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 82  NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 228
           N+ +   +SG+ +   S    +   DPFFS  S+G          G AF
Sbjct: 102 NQAYTSSHSGMFTPAGSGSAAVTVADPFFSLSSSGEMRRSMNEDAGAAF 150


>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
           helicase SDE3 [Arabidopsis thaliana] GI:13811296
          Length = 1002

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = +1

Query: 106 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP 246
           SG  SD     +       F    ++G SG Y P   GP  V    P
Sbjct: 4   SGYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFP 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,883,421
Number of Sequences: 28952
Number of extensions: 178694
Number of successful extensions: 494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)