Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_L03
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.) 253 8e-68
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 172 3e-43
SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14) 158 4e-39
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0) 150 1e-36
SB_58786| Best HMM Match : Aldedh (HMM E-Value=0) 134 8e-32
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 8e-32
SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16) 131 4e-31
SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23) 104 8e-23
SB_26122| Best HMM Match : Aldedh (HMM E-Value=0) 97 9e-21
SB_57708| Best HMM Match : Aldedh (HMM E-Value=0) 87 1e-17
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_22312| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_6771| Best HMM Match : Aldedh (HMM E-Value=0) 54 1e-07
SB_19772| Best HMM Match : Aldedh (HMM E-Value=5.9e-12) 45 7e-05
SB_13735| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.030
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13) 29 3.5
SB_18394| Best HMM Match : TFIID-31kDa (HMM E-Value=0) 29 3.5
SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_384| Best HMM Match : IBR (HMM E-Value=1.1e-12) 28 6.0
SB_40957| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 28 8.0
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 28 8.0
>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 253 bits (620), Expect = 8e-68
Identities = 125/224 (55%), Positives = 150/224 (66%)
Frame = +1
Query: 4 SKKTFPTINPQDESVIVQVAEGXXXXXXXXXXXXXXXFHRYSEWRLLDASQRGLLLFKLA 183
S K FPTINP I ++EG F S WR +DAS RG LL+KLA
Sbjct: 343 SGKVFPTINPTTGEKICDISEGDKEDVDKAVKAAKEAFKLGSAWRTMDASMRGKLLYKLA 402
Query: 184 TLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGKADKILGNTIPADGEVLTF 363
L++RD YLA LET+D+GK + ++ ++ RYYAG ADK+ G TIPADG +
Sbjct: 403 QLIDRDIAYLASLETIDSGKLFSDSVGDMQSSANCFRYYAGWADKVTGKTIPADGPYFVY 462
Query: 364 TLKEPVGVCGQILPWNYPIPMFIWKIAPALAAGCTVVVKPAEQTPLTALAMAALVKEAGV 543
T EPVG+ G I PWN+P+ M KIAPALA G V++KPAEQTPLTAL ALVKEAG
Sbjct: 463 TRHEPVGLVGAITPWNFPLNMASVKIAPALACGNVVILKPAEQTPLTALYFCALVKEAGF 522
Query: 544 PAGVVNVIPGYGPTAGAALTLHPDVDXVAFTGSTEVGRIIMRAA 675
PAGVVNVIPGYGPTAGAA+T H D+D V+FTGSTEVGR+I A+
Sbjct: 523 PAGVVNVIPGYGPTAGAAITTHLDIDKVSFTGSTEVGRLIQEAS 566
>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 1485
Score = 172 bits (418), Expect = 3e-43
Identities = 83/138 (60%), Positives = 99/138 (71%)
Frame = +1
Query: 127 SEWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAG 306
S WR +DAS RG L+KLA L ERDA YLA LE+ D GK + +A+ +V G RYYAG
Sbjct: 1254 SVWRTMDASARGHFLYKLADLCERDADYLARLESYDGGKVINEAKIDVQGMIGCFRYYAG 1313
Query: 307 KADKILGNTIPADGEVLTFTLKEPVGVCGQILPWNYPIPMFIWKIAPALAAGCTVVVKPA 486
ADK+ G TIPADG T+T EPVGV G I PWN+P+ M K+APALA GC V++KPA
Sbjct: 1314 WADKVTGKTIPADGPFFTYTRHEPVGVVGAITPWNFPLLMEGLKLAPALACGCVVILKPA 1373
Query: 487 EQTPLTALAMAALVKEAG 540
EQTPLTAL +A+LVKE G
Sbjct: 1374 EQTPLTALYLASLVKEVG 1391
>SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14)
Length = 266
Score = 158 bits (383), Expect = 4e-39
Identities = 88/208 (42%), Positives = 116/208 (55%), Gaps = 7/208 (3%)
Frame = +1
Query: 10 KTFPTINPQDESVIVQVAEGXXXXXXXXXXXXXXXFHRYSEWRLLDASQRGLLLFKLATL 189
+T +NP VI +V F S W + +R LL+ A L
Sbjct: 59 QTIQVLNPATAEVIARVPRAGQREIDRAVMAARQAFDD-SPWSRIKPVERQKLLWNFADL 117
Query: 190 MERDAKYLAELETLDNGKPVKQAEQ-EVLWASGIVRYYAGKADKILGNTIPA------DG 348
+E++A LAE+E++DNGK AE ++ A +RY AG A KI G T+ D
Sbjct: 118 IEKNAALLAEIESIDNGKSAVIAEHVDIRLAVDFLRYMAGFATKIEGRTVQVSVPFMPDA 177
Query: 349 EVLTFTLKEPVGVCGQILPWNYPIPMFIWKIAPALAAGCTVVVKPAEQTPLTALAMAALV 528
+ +T +E VGV G I+ WN+P+ + WK+ PALA GCT V+KPAE TPLTAL +A L
Sbjct: 178 QFHGYTRREAVGVVGAIVAWNFPLLLACWKLGPALATGCTTVLKPAEDTPLTALKLAELA 237
Query: 529 KEAGVPAGVVNVIPGYGPTAGAALTLHP 612
EAG PAGVVNV+ G G AGAAL+ HP
Sbjct: 238 LEAGYPAGVVNVVTGLGHEAGAALSSHP 265
>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 880
Score = 150 bits (363), Expect = 1e-36
Identities = 76/181 (41%), Positives = 110/181 (60%)
Frame = +1
Query: 124 YSEWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYA 303
+ W +L S+RG +L + L+ + + +A++E DNGKP +A +V + ++ YYA
Sbjct: 326 FKTWSVLSGSERGRILGDASRLVRKRREDIAKVEVHDNGKPFHEALWDVDNVADVLEYYA 385
Query: 304 GKADKILGNTIPADGEVLTFTLKEPVGVCGQILPWNYPIPMFIWKIAPALAAGCTVVVKP 483
G A + G + +T +EP+GV G I WNYPI WKIAPA+A G T+V KP
Sbjct: 386 GVAPTLSGQHVQLPNGSFAYTRREPLGVVGGIGAWNYPIQTACWKIAPAIACGNTIVYKP 445
Query: 484 AEQTPLTALAMAALVKEAGVPAGVVNVIPGYGPTAGAALTLHPDVDXVAFTGSTEVGRII 663
+ TP+ A+A+A ++ EAGVP GVVN+I G G T G L+ P+V V+FTGS G+ I
Sbjct: 446 SPLTPMNAVALADILTEAGVPPGVVNIIQGGGET-GEMLSKDPNVAKVSFTGSVPTGQKI 504
Query: 664 M 666
M
Sbjct: 505 M 505
>SB_58786| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 421
Score = 134 bits (323), Expect = 8e-32
Identities = 66/172 (38%), Positives = 109/172 (63%), Gaps = 2/172 (1%)
Frame = +1
Query: 148 ASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGKADKILG 327
A +R ++L K L+ + +A++ TL++GKP+ +A EVL+A+ + +++ +A ++ G
Sbjct: 4 AKERSIILRKWYDLILENIDDIAKIITLESGKPLLEARGEVLYAANYIEFFSEEAKRVYG 63
Query: 328 NTIPAD--GEVLTFTLKEPVGVCGQILPWNYPIPMFIWKIAPALAAGCTVVVKPAEQTPL 501
+ IP++ G+ + T KEPVGVC I PWN+PI M + K + A+A GCT++ +P+ QTPL
Sbjct: 64 DIIPSNNPGQKVLIT-KEPVGVCASITPWNFPIAMLVRKASSAIACGCTMIARPSGQTPL 122
Query: 502 TALAMAALVKEAGVPAGVVNVIPGYGPTAGAALTLHPDVDXVAFTGSTEVGR 657
+ALA+ L +A +P GV N+I G L + ++FTGST VG+
Sbjct: 123 SALALGELALKAEIPDGVFNIIVGSSSLISNKLCDSDIIRKLSFTGSTAVGQ 174
>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 134 bits (323), Expect = 8e-32
Identities = 74/181 (40%), Positives = 110/181 (60%), Gaps = 1/181 (0%)
Frame = +1
Query: 124 YSEWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQ-EVLWASGIVRYY 300
+ W L R L+ +A +++ A+ +A LE++DNGK V++ ++ + + ++
Sbjct: 692 FQSWSKLPGHARARHLYSIARHVQKHARLIAVLESMDNGKSVRETRDCDIPNVARHLYHH 751
Query: 301 AGKADKILGNTIPADGEVLTFTLKEPVGVCGQILPWNYPIPMFIWKIAPALAAGCTVVVK 480
AG A + D E+ + +PVGV G I+PWN+P+ + WK+ PALA G TVV+K
Sbjct: 752 AGWAQLM-------DTEMQGW---KPVGVVGGIVPWNFPLMLLCWKVCPALAMGNTVVLK 801
Query: 481 PAEQTPLTALAMAALVKEAGVPAGVVNVIPGYGPTAGAALTLHPDVDXVAFTGSTEVGRI 660
PA T L+AL A + EAG+P GV NV+ G G G+ L HPDVD VAFTGSTEVG++
Sbjct: 802 PATYTRLSALLFAEICAEAGLPPGVFNVVTGNG-AFGSQLAGHPDVDKVAFTGSTEVGKL 860
Query: 661 I 663
+
Sbjct: 861 L 861
Score = 57.2 bits (132), Expect = 1e-08
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 11/177 (6%)
Frame = +1
Query: 19 PTINPQDESVIVQVAEGXXXXXXXXXXXXXXXFHRYSEWRLLDASQRGLLLFKLATLME- 195
P +NP E VI QVA+G S W A R +++ LA +E
Sbjct: 1166 PILNPSGE-VIAQVADGNRKDIREAVEAAHKAA---SGWGKRAAHNRAQIVYYLAENLEM 1221
Query: 196 RDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGKADKILGN--------TIPADGE 351
R A+ A + + G+ + + + EV + + YY ADK GN T P +
Sbjct: 1222 RRAEVAARISDM-TGQSLDECKAEVDASIQRLFYYGAYADKFGGNRPVFSDKDTKPEETP 1280
Query: 352 VLTFTLK--EPVGVCGQILPWNYPIPMFIWKIAPALAAGCTVVVKPAEQTPLTALAM 516
T+K EPVGV G P + F+ +APA+ G TVV+ P+E+ P+ A M
Sbjct: 1281 FYGATIKIHEPVGVIGIACPDECSLLAFVSLLAPAIIRGNTVVIVPSEKYPVVAADM 1337
>SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16)
Length = 266
Score = 131 bits (317), Expect = 4e-31
Identities = 71/187 (37%), Positives = 109/187 (58%), Gaps = 5/187 (2%)
Frame = +1
Query: 124 YSEWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQ-EVLWASGIVRYY 300
+ W + + R L KLA L+E + A+ E+ D GK V A ++ +R +
Sbjct: 59 FKSWSVSSPAYRAERLRKLADLIEDRLEEFAQAESRDQGKTVNFARNVDIPRCCLNLRMF 118
Query: 301 AGKADKILGNTIPAD----GEVLTFTLKEPVGVCGQILPWNYPIPMFIWKIAPALAAGCT 468
A ++G+ A+ V+ ++L+ P GV G I PWN P+ + +KIAPA+A+GCT
Sbjct: 119 ASAI--MVGSNSRANFLESQAVVNYSLRSPKGVAGLISPWNLPLYLLSFKIAPAVASGCT 176
Query: 469 VVVKPAEQTPLTALAMAALVKEAGVPAGVVNVIPGYGPTAGAALTLHPDVDXVAFTGSTE 648
VV KP+E T +TA MA L+ +AG P GV+N++ G G G+A+ HPDV ++FTGST
Sbjct: 177 VVCKPSEMTSVTAWMMAELINDAGFPPGVINIVFGTGSRTGSAIVQHPDVHLISFTGSTT 236
Query: 649 VGRIIMR 669
+G +I +
Sbjct: 237 IGELITK 243
>SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)
Length = 275
Score = 104 bits (249), Expect = 8e-23
Identities = 58/182 (31%), Positives = 87/182 (47%), Gaps = 1/182 (0%)
Frame = +1
Query: 130 EWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGK 309
EW+ QR +L + + L + + GK + + E + YYA +
Sbjct: 58 EWQKSGLEQRYSVLMAIGDELIARKDELGAILAREEGKTLAEGVGETYRSGQFFHYYAAE 117
Query: 310 ADKILGNTIPADGEVLTF-TLKEPVGVCGQILPWNYPIPMFIWKIAPALAAGCTVVVKPA 486
+ +G T + + T +EPVGV G I PWN+P WKIAPALA G +V KPA
Sbjct: 118 VLRQMGETAESVRPGIEIETRREPVGVVGIITPWNFPTATGAWKIAPALAFGNAIVWKPA 177
Query: 487 EQTPLTALAMAALVKEAGVPAGVVNVIPGYGPTAGAALTLHPDVDXVAFTGSTEVGRIIM 666
Q P +A A+ ++ +PAG N++ G G G + ++ + FTGS E GR +
Sbjct: 178 NQVPASAWALTEIISRQNLPAGTFNLVMGPGADVGDVMINSRGINALTFTGSLETGRKVA 237
Query: 667 RA 672
A
Sbjct: 238 AA 239
>SB_26122| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 462
Score = 97.5 bits (232), Expect = 9e-21
Identities = 51/154 (33%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Frame = +1
Query: 187 LMERDAKYLAELETLDNGKPVKQAEQEVLWASGI--VRYYAGKADKILGNTIPADGEVLT 360
L+E+ ++ ++ ETLD G + +A +A+ + +R A I+G + A+G L
Sbjct: 87 LLEKRSEDFSKAETLDTGTVISRANNNKEFANEVLNIRVLVDHALSIMGEST-AEGGTLC 145
Query: 361 FTLKEPVGVCGQILPWNYPIPMFIWKIAPALAAGCTVVVKPAEQTPLTALAMAALVKEAG 540
++++ +GV I W+ +P + + PA+A+G VV+KP+ PLT +A ++K++G
Sbjct: 146 YSIRHSLGVVAIITSWSQALPSILRHLVPAMASGNCVVIKPSCLAPLTVHLLAKVLKDSG 205
Query: 541 VPAGVVNVIPGYGPTAGAALTLHPDVDXVAFTGS 642
+P GVVN++ G G G L H DV VA GS
Sbjct: 206 IPKGVVNIVYGRGEVIGRILARHHDVAAVALVGS 239
>SB_57708| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 528
Score = 87.0 bits (206), Expect = 1e-17
Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Frame = +1
Query: 406 WNYPIPMFIWKIAPALAAGCTVVVKPAEQTPLTALAMAALVKEAGVPAGVVNVIPGYGPT 585
WN+P+ M K A ALAAGCTV++KP+E+TP ALA+ L +EAG PAGV+N IP
Sbjct: 149 WNFPLGMITRKAAAALAAGCTVIIKPSEETPFCALALQQLAEEAGFPAGVINTIPCSRDR 208
Query: 586 AGAA--LTLHPD-VDXVAFTGSTEVGRIIM 666
L D V ++FTGST G+I+M
Sbjct: 209 VNEVTDTVLKSDLVSKMSFTGSTATGKILM 238
>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 69.3 bits (162), Expect = 3e-12
Identities = 32/66 (48%), Positives = 41/66 (62%)
Frame = +1
Query: 475 VKPAEQTPLTALAMAALVKEAGVPAGVVNVIPGYGPTAGAALTLHPDVDXVAFTGSTEVG 654
V A+ TP+TAL A L AG P GV+N++PG G G + HPDV + FTGST VG
Sbjct: 752 VDAAKVTPMTALKFAELAARAGFPKGVINILPGSGSVVGNRICEHPDVRKLGFTGSTPVG 811
Query: 655 RIIMRA 672
+ IM +
Sbjct: 812 KAIMES 817
>SB_22312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +1
Query: 535 AGVPAGVVNVIPGYGPTAGAALTLHPDVDXVAFTGSTE 648
AG P GVVN++PG+GPTAG A+ H DVD +AFTGSTE
Sbjct: 1 AGFPEGVVNIVPGFGPTAGGAIASHMDVDKIAFTGSTE 38
>SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 54.0 bits (124), Expect = 1e-07
Identities = 34/101 (33%), Positives = 51/101 (50%)
Frame = +1
Query: 373 EPVGVCGQILPWNYPIPMFIWKIAPALAAGCTVVVKPAEQTPLTALAMAALVKEAGVPAG 552
EP+GV I WNYP+ + + A+A G V+KP+E TA +A LV + P
Sbjct: 71 EPLGVALIISAWNYPVQLIFLPLVGAIAGGNCAVLKPSEVASATAQLVADLVPKYLDP-D 129
Query: 553 VVNVIPGYGPTAGAALTLHPDVDXVAFTGSTEVGRIIMRAA 675
V+ G P L+ D + +TG + VG+++M AA
Sbjct: 130 CYPVVNGGVPE--TQQLLNQKFDKIFYTGGSAVGKLVMAAA 168
>SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 523
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/68 (42%), Positives = 39/68 (57%)
Frame = +1
Query: 445 PALAAGCTVVVKPAEQTPLTALAMAALVKEAGVPAGVVNVIPGYGPTAGAALTLHPDVDX 624
PAL G V+ KPA L+ + + +EAG+P GV+N +P G T G A+T P +
Sbjct: 200 PALM-GNVVLWKPASTAILSQYRVMEMFQEAGLPDGVINFVPSSGSTFGNAMTTSPHLAA 258
Query: 625 VAFTGSTE 648
V FTGS E
Sbjct: 259 VNFTGSVE 266
>SB_19772| Best HMM Match : Aldedh (HMM E-Value=5.9e-12)
Length = 211
Score = 44.8 bits (101), Expect = 7e-05
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +1
Query: 220 LETLDNGKPVKQA-EQEVLWASGIVRYYAGKADKILGNTIP---ADGEVLT 360
LETLDNGKP + ++ + RYYAG ADKI G TIP DGE +T
Sbjct: 33 LETLDNGKPYNDSFNVDLEFTIKCYRYYAGWADKIHGKTIPLGKVDGEQMT 83
>SB_13735| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 35.9 bits (79), Expect = 0.030
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = +1
Query: 154 QRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGKADKILGNT 333
+RG ++ ++ + L +L +L+ GK + E+ + Y G + G
Sbjct: 73 KRGEVVRQIGHALREKLTPLGKLLSLEVGKIFPEGVGEIQEYIDVCDYAVGLSRMFDGKV 132
Query: 334 IPAD--GEVLTFTLKEPVGVCGQILPWNYPIPMFIWKIAPALAAG 462
P++ G L PVG G I +N+P+ +F W A ++ G
Sbjct: 133 FPSERPGHAL-LEQWNPVGTVGVITAFNFPVAVFGWNTAISMTCG 176
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +3
Query: 441 CSSFGCRLHSCC*ACRANTTHSACYGRACQGSWCPSRSC 557
C + C C C N T AC ++C+ S CP C
Sbjct: 322 CQAISCGGDRCTQECGKNCTSMACTAKSCELS-CPGGGC 359
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 456 CRLHSCC*ACRANTTHSACYGRACQGSWCPSRSC 557
C+ SC C A T S+C +C C +C
Sbjct: 183 CKTGSCSFNCAAQTCESSCAHGSCPNMTCGGTNC 216
>SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = -1
Query: 677 GAARIIMRPTSVDPVKATXSTSG*RVRAAPAVGP*PGITLTTPAGTPASLTSAAIAS 507
G A P+S P A +++G G PG T P TP TSAA A+
Sbjct: 84 GGAATTPGPSSAAPTSAAPTSAG-PTTGGQTSGSTPGGTTAAPQTTPGGATSAASAT 139
>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
Length = 1027
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/66 (33%), Positives = 29/66 (43%)
Frame = -1
Query: 650 TSVDPVKATXSTSG*RVRAAPAVGP*PGITLTTPAGTPASLTSAAIASAVSGVCSAGLTT 471
T+V AT +T+ V TLTT A+LT+ IA+A +A LTT
Sbjct: 648 TTVTTAAATLTTAAATVTTVTTAAA----TLTTVTTAAATLTTVTIAAATLTTAAATLTT 703
Query: 470 TVQPAA 453
AA
Sbjct: 704 VTTAAA 709
>SB_18394| Best HMM Match : TFIID-31kDa (HMM E-Value=0)
Length = 326
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 481 PAEQTPLTALAMAALVKEAGV 543
PA TP AL MAA++KE G+
Sbjct: 22 PARSTPKDALVMAAILKEMGI 42
>SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 117 PSLLRMASPGCFTKRPTALQTGH-PHGERRKIFSRTRNTGQRKTSEASRTRSLVG 278
PSL++ S TK+ T +T H E + F+R G R+ + ++T+ L G
Sbjct: 303 PSLMQRPSKKTQTKKGTGDETEDCRHAETMRDFTREYGRGVRQANVRAKTKELTG 357
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -1
Query: 650 TSVDPVKATXSTSG*RVRAAPAVGP*PGITLTTPAGTPASL-TSAAIASAVSGVCSAGLT 474
T+ + A +T+ V AP + T P T ASL T+A++A+ +A L
Sbjct: 573 TAPEATTAPETTTALLVTTAPETTT-ASLVTTAPEATTASLATTASLATTAPETATASLA 631
Query: 473 TTVQPAAKA 447
TT A A
Sbjct: 632 TTAPEATTA 640
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -1
Query: 650 TSVDPVKATXSTSG*RVRAAPAVGP*PGITLTTPAGTPASL-TSAAIASAVSGVCSAGLT 474
T+ + A +T+ V AP + T P T ASL T+A++A+ +A L
Sbjct: 158 TAPEATTAPETTTASLVTTAPETTT-ASLVTTAPEATTASLATTASLATTAPETTTASLA 216
Query: 473 TTVQPAAKA 447
TT A A
Sbjct: 217 TTAPEATTA 225
>SB_384| Best HMM Match : IBR (HMM E-Value=1.1e-12)
Length = 259
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 414 PNPDVHMENCSSFGCRLHSCC*ACRANTTHSACYGRACQGSWCPSRSCQ 560
P PD S G CC C +S C+ AC+G W P + CQ
Sbjct: 116 PKPDCKGVVESIPGAAKEVCCSECG----YSFCF--ACKGPWHPEKHCQ 158
>SB_40957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 555 NSCWDTSFLDKRGHSKRCEWCLLCRLNNNCATCSQSWSN 439
NSC TS L +R + WC + N + T S SW N
Sbjct: 245 NSCDPTSLLRERSPAYLRTWCTVSSCNCSTRTLS-SWGN 282
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +3
Query: 372 GTRRCLRPNLTMELPNPDVHMENCSSFGCRLHSCC*ACRANTTHSACYGRACQGSWCP-S 548
G ++C TM NPD+ + N G R C + + Q S CP S
Sbjct: 1583 GNQKCCSDGCTMICTNPDLDIVNAPVRGRRKPGICPVMSVSKAPCPTTNQCSQDSDCPGS 1642
Query: 549 RSC 557
+ C
Sbjct: 1643 QKC 1645
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 142 LDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVL 273
LDA G++ F+LA E + ++E D G P ++ V+
Sbjct: 2253 LDAGVNGVVKFRLAEQTELGGNRVVKVEAYDQGSPSLSSQVSVI 2296
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = -1
Query: 650 TSVDPVKATXSTSG*RVRAAPAVGP*--PGI-TLTTPAGTPASLTSAAIASAVSGVCSA- 483
+S P A+ ST G + P P PG + TTP P+S AA++S S+
Sbjct: 991 SSSTPGAASSSTPGAALSRTPGAAPSSTPGAASSTTPGAAPSSTPGAAMSSIPGATSSST 1050
Query: 482 -GLTTTVQPAA 453
G ++ P A
Sbjct: 1051 PGAASSSTPGA 1061
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,484,147
Number of Sequences: 59808
Number of extensions: 440803
Number of successful extensions: 1440
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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