Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_L02
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 45 9e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 1e-05
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 31 0.12
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.29
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 30 0.29
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 30 0.29
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 28 1.2
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.7
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 26 3.5
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 3.5
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.7
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 4.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 6.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 6.2
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 25 8.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 8.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.2
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 25 8.2
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 44.8 bits (101), Expect = 9e-06
Identities = 33/106 (31%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Frame = -2
Query: 580 PSIPGSPGRPGAPGKPVLPFNPDRPGNPRSPF*PGDPGEPSNPGIPKSPFNPGLPGKP-Y 404
P +P +P RP AP P P P RP P P P P P P+ P P P P
Sbjct: 539 PEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVV 598
Query: 403 PGAXXXXXXXXXXXXXXXXSIPINPGKPASPFWPFSDAKPGSPF*P 266
P A S+P P P P P P +P P
Sbjct: 599 PEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVP 644
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.4 bits (100), Expect = 1e-05
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 583 VPSIPGSPGRPGA--PGKPVLPFNPDRPGNPRSPF*PGDPGEPSNPGIPKSPFNPGLPG 413
+P IPG+PG P P++P P +PF PG P P+ PGIP + PG PG
Sbjct: 505 LPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPF-PGYPAVPAMPGIPGATAPPGAPG 562
Score = 36.3 bits (80), Expect = 0.003
Identities = 23/60 (38%), Positives = 26/60 (43%)
Frame = -2
Query: 580 PSIPGSPGRPGAPGKPVLPFNPDRPGNPRSPF*PGDPGEPSNPGIPKSPFNPGLPGKPYP 401
P +P P PGAPG P L + P PG P PG P P PG+PG P
Sbjct: 501 PGVP-LPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAP--FPGYPAVPAMPGIPGATAP 557
Score = 34.3 bits (75), Expect = 0.013
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +3
Query: 408 GLPGSPGL---KGDFGMPGLDGSPGSPGQKGDRGFPGLSGLKGNTGLPGAPGRPGEPGMD 578
G PG P L + PG+ PG P FPG + G+PGA PG PG
Sbjct: 510 GAPGMPNLNMSQPPMVPPGMALPPGMPAP-----FPGYPAVPAMPGIPGATAPPGAPGSY 564
Query: 579 GT 584
T
Sbjct: 565 NT 566
Score = 33.9 bits (74), Expect = 0.018
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +3
Query: 399 PGYGLPGSPGLKGDF-GMPGLDGSPGSPGQKGDRGFPGLSGLKGNTGLPGAPG 554
PG LP PG+ F G P + PG PG G PG ++ L PG
Sbjct: 527 PGMALP--PGMPAPFPGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPG 577
Score = 29.5 bits (63), Expect = 0.38
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = +3
Query: 399 PGYGLPGSPGLKGDFGMPGLDGSPGSPGQKGDRGFPGLSG-LKGNTGLPGAPGRPGEPGM 575
PG LP PG G MP L+ S G PG+ G +P PG PG
Sbjct: 501 PGVPLPPIPGAPG---MPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAP 557
Query: 576 DGTP 587
G P
Sbjct: 558 PGAP 561
Score = 29.5 bits (63), Expect = 0.38
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Frame = +3
Query: 39 PGAPGLAGINGI------PGEKGDKGAI----GYQGAPGTPGPQGSVGPIGAPG 170
PGAPG+ +N PG G GY P PG G+ P GAPG
Sbjct: 509 PGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAPG 562
Score = 29.1 bits (62), Expect = 0.50
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +3
Query: 15 GFPGSRGRPGAPGLAGINGIPGEKGDKGAIGYQGAPGTPGPQG 143
G+P PG PG G PG + PG P G
Sbjct: 541 GYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMPNG 583
Score = 29.1 bits (62), Expect = 0.50
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -2
Query: 586 GVPSIPGSPGRPGAPGKPVLP--FNPDRPGNPRSP 488
G P++P PG PGA P P +N N +P
Sbjct: 541 GYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAP 575
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +3
Query: 21 PGSRGRPGAPG-LAGINGIPGEKGDKGAIGYQGAPGTPGPQGSVGPIGAPGL 173
PG PG P G +P G GA GAPG+ S PG+
Sbjct: 527 PGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGV 578
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 399 PGY-GLPGSPGLKGDFGMPGLDGSPGSPGQKGDRGFPGLS 515
PGY +P PG+ G PG GS + PG+S
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVS 579
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 31.1 bits (67), Expect = 0.12
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 441 FGMPGLDGSPGSPGQKGDRGFPG 509
+G GL+G PG PG GFPG
Sbjct: 71 YGEEGLNGQPGGPGGGPGEGFPG 93
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.29
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = -2
Query: 580 PSIPGSPGRPGAPGKPVLPFNPDRPGNPRSPF*PGDPGEPSN---PGIPKSPFNPGLPGK 410
P+ PG+P P P + P P++P + PS+ P P S P +P
Sbjct: 1433 PTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNV 1492
Query: 409 PYP 401
P P
Sbjct: 1493 PVP 1495
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 29.9 bits (64), Expect = 0.29
Identities = 10/37 (27%), Positives = 25/37 (67%)
Frame = +1
Query: 1 QKVRKDFLVAVDAPVRQAWQESMVYQAKKETRELSDI 111
+K K+ L+ + + + + W++SM+Y+ +KE +L ++
Sbjct: 55 KKCWKEKLMKIRSELEELWEQSMMYEEQKELTQLGEM 91
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 29.9 bits (64), Expect = 0.29
Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 4/90 (4%)
Frame = -2
Query: 568 GSPGRP-GAPGKPVLPFNPDRPGNPRSPF*PGDPGEPSNPG---IPKSPFNPGLPGKPYP 401
G P + AP P NP RP NP P +P SN KS +P P
Sbjct: 923 GLPAKSIAAPPGPEYRLNPSRPINPFEP--TAEPDWISNTKQSFDKKSSLIDSIPALS-P 979
Query: 400 GAXXXXXXXXXXXXXXXXSIPINPGKPASP 311
IPI P KP P
Sbjct: 980 APSSLARSSVSSQRSSTSIIPIKPNKPTKP 1009
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = -3
Query: 564 LQDAQAH-QVNQCYLSILIDPGIHDPLFDLVILENHLILAFQSLLLTRD 421
+QDA V++CYL+ L I L L + + L+L+F+SLL T+D
Sbjct: 175 IQDAMHRFPVSECYLACLKACSI---LAQLFLSKETLMLSFRSLLQTKD 220
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -2
Query: 583 VPSIPGSPG--RPGAPGKPVLPFNP 515
+PSIPG P P P LPFNP
Sbjct: 154 MPSIPGFGNLPNPAMPPIPFLPFNP 178
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 3.5
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 337 WVWMVCRAKMVKKVIKEIQVPLD 405
W+W VC + ++ +I + VPL+
Sbjct: 112 WIWHVCLSILLPLIIMAMMVPLE 134
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 396 APGYGLPGSPGLKGDFGMPGLDGSPGSPG 482
+PGY P S + +G+ SP SPG
Sbjct: 1536 SPGYTSPFSSAMSPGYGLTSPSYSPSSPG 1564
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/57 (26%), Positives = 21/57 (36%)
Frame = -2
Query: 571 PGSPGRPGAPGKPVLPFNPDRPGNPRSPF*PGDPGEPSNPGIPKSPFNPGLPGKPYP 401
P PG+ +PV + + P P P + + P SP P G P P
Sbjct: 362 PAQPGQYNQQSQPVQSYQSGQSTQHFQPVQPIQPVQSTQYYQPSSPVQPVQNGVPAP 418
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 4.7
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = -2
Query: 535 PVLPFNPDRPGNPRSPF*PGDP--GEPSNPGIPKSPFNPGLP-GKPYP 401
PV P D P NP +PF P +P + N PGL G YP
Sbjct: 266 PVYPSMKDVPNNPFTPFSPINPYYAKSWNHTASAPLLPPGLKNGSDYP 313
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +3
Query: 21 PGSRGRPGAPGLAGINGIPGEKGDKGAIGYQGAPGTPGP 137
P + + G P A + +P GA G PG P P
Sbjct: 1887 PMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAP 1925
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.4 bits (53), Expect = 6.2
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +2
Query: 395 CPWIWFTWKSRVKRRLW 445
C +F W+ +V+R+LW
Sbjct: 590 CTAAYFVWQKKVERKLW 606
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/52 (26%), Positives = 20/52 (38%)
Frame = -2
Query: 556 RPGAPGKPVLPFNPDRPGNPRSPF*PGDPGEPSNPGIPKSPFNPGLPGKPYP 401
RP G + + RP P P + NP + K ++P L P P
Sbjct: 171 RPNIEGVQIHTIHLPRPKTEDKPKDPEGKLDTKNPVVSKVTWSPSLSEPPLP 222
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 469 GEPSNPGIPKSPFNPGLP 416
G PS P +P+NPG P
Sbjct: 584 GNPSTVPPPTNPYNPGYP 601
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 8.2
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = -2
Query: 583 VPSIPGSPGRPGAP---GKPVLPFNPDRPGNPRSPF*PGDPGEPSNPGIPKSPFNPGLPG 413
+PSIP G P P G P +P P P P P+ G P P P +
Sbjct: 1073 IPSIPAPSGAPPVPAPSGIPPVP-KPSVAAPPVPKPSVAVPPVPAPSGAPPVP-KPSVAA 1130
Query: 412 KPYP 401
P P
Sbjct: 1131 PPVP 1134
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 252 NLCLLFHQVNLLFLVVQVAQQSLDLPLIL 166
+L L+H+V++ V Q ++ S D PL+L
Sbjct: 1252 HLLKLWHEVSVRAGVAQTSKPSFDAPLVL 1280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,751
Number of Sequences: 5004
Number of extensions: 48263
Number of successful extensions: 191
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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