Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L01
         (490 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   4.5  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   6.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   7.9  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 238 TLSAGRTLCLTP 273
           TL++GRTL +TP
Sbjct: 169 TLASGRTLTVTP 180


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 216 LSRIVHHQRKSQCCLVSKLTCNYDNP---YSSCQCRFFL 109
           L R+   ++K   C+VS L+C  +      SS + R FL
Sbjct: 214 LLRLPKFKKKPLLCVVSTLSCYLERTELLRSSGETRLFL 252


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 276 ARREAQRSACRERRNPPRG*LSRIVHHQ 193
           A RE  R+   +RRN P+     I  H+
Sbjct: 313 APRERPRATDHQRRNEPKRPRPNIDRHE 340


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,458
Number of Sequences: 336
Number of extensions: 2433
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)