Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L01
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    30   0.22 
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    30   0.22 
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    26   2.7  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    26   3.5  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    25   6.1  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   6.1  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   6.1  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   8.1  

>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
 Frame = +3

Query: 117 IGIDNWNKDYHNYTLIWKPDSI--ETYVDGELYGTINPGEGFYALGRQ-NAVPHAA--QW 281
           IGI  W  DY+     WK  ++  ++Y  G++Y      E    LG+  + +  +A   W
Sbjct: 270 IGISGWLGDYNEVDAAWKSLTVGDKSYYWGDIYALKFEVEALVDLGKSLSRILFSAGLGW 329

Query: 282 LSG-----TVMAPLDQIFYISLGLRVGGV 353
           + G     T++APL    +    L+VG +
Sbjct: 330 VKGEVISRTILAPLAAALWPLSLLKVGNI 358


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 60  GGPVLSDTEPFRTLLLKEKIGIDNWNKDYHNYTLIWKPDSIETYVDG 200
           GG +  +   F  +LLK+ I   N+ ++ ++   + K  S++T+VDG
Sbjct: 218 GGIIALEALKFLNVLLKDNISNQNYFRESNHIPSLLKLLSVDTFVDG 264


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 117 IGIDNWNKDYHNYTLIWKPDSIETYVDGEL 206
           +G+ NW  + + Y LIW    +    D +L
Sbjct: 109 VGLQNWTPEKNRYGLIWNQWCLSHLTDEDL 138


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 117 IGIDNWNKDYHNYTLIWKPDSIETYVDGELYGTINPGEGFYALGRQNAVPHAAQWLSGTV 296
           +G+  W K   +   I    +I  + D  LYG I P   F  + R    P   Q +  T+
Sbjct: 1   MGLKLWVKQRRSLPFIIGTIAIALFTDLFLYGIITPILPFSLVDRVGISPDRVQSVISTL 60

Query: 297 MA 302
           +A
Sbjct: 61  LA 62


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -3

Query: 389 PPGFVCAVGEIIHA-ADA*TQRYIEDLIERRHDCSGEPLRGVRHSVLPAESVETLPG 222
           P G    VG + HA A A +  Y   +    +          + S++PAE +ETL G
Sbjct: 393 PTGLYDLVGVLSHAGASASSGHYQAWIRNSNNRAEWFRFNDAKVSIVPAEKIETLDG 449


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 30  GNAVFGKKLYGGPVLSDTEPFRTLLLKEKIGIDNWNKDYHNYTLIWKPDSIETYVDGE 203
           GN  F  +      L D+E    L  ++K  + N  +   NY  I KP+++    D E
Sbjct: 107 GNVAFDSEFDSNLKLLDSELKSWLKAQKKRSVPNGTQLVKNYNKISKPETVPPDDDPE 164


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +1

Query: 166 GNQTALRLTLMVNYTGQSTPGRVSTLSAGRTLCLTPRSGSPEQSWRLSIKSS 321
           GN  AL  T     T  S+  +VS+LSA      TPR    E    + ++SS
Sbjct: 13  GNNNALEKTSSNEATSSSST-QVSSLSASGISVSTPRVSPFEPERNMQVQSS 63


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 4   ASSRSPSQKATLSSERNFTVDPFSPT 81
           A+  SP+   T+SSERN    P +PT
Sbjct: 338 ANRFSPAAPTTVSSERNAPPYPSAPT 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,339
Number of Sequences: 5004
Number of extensions: 39762
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)