Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L01
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        29   1.6  
SB_50822| Best HMM Match : 6PGD (HMM E-Value=3.7e-22)                  29   2.7  
SB_30882| Best HMM Match : DUF1694 (HMM E-Value=4.8)                   28   4.7  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_57162| Best HMM Match : DUF1086 (HMM E-Value=3.4)                   27   6.3  
SB_34962| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_22733| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.8)             27   6.3  
SB_1152| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4)                   27   6.3  
SB_57197| Best HMM Match : Transposase_21 (HMM E-Value=0.27)           27   6.3  
SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)                27   6.3  
SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 45  GKKLYGGPVLSDTEPFRTLLLKEKIGIDNWNKDYHNYTLIWK 170
           G+ LY   ++S  + F  +L++E   + NW  +Y    L+W+
Sbjct: 282 GQALYASKIVSYAQGF--MLMREAAKVFNWKLNYGGIALMWR 321


>SB_50822| Best HMM Match : 6PGD (HMM E-Value=3.7e-22)
          Length = 122

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 48  KKLYGGPVLSDTEPFRTLLLKEKIGIDNWNKDYHNYTLIWK 170
           K LY   ++S  + F  +L++E   + NW  +Y    L+W+
Sbjct: 44  KALYASKIVSYAQGF--MLMREAAKVFNWKLNYGGIALMWR 82


>SB_30882| Best HMM Match : DUF1694 (HMM E-Value=4.8)
          Length = 172

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 114 KIGIDNWNKDYHNYTLIWK 170
           K+GI   N +++NY L+WK
Sbjct: 28  KLGIQGSNNEHNNYLLLWK 46


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 202  NYTGQSTPGRVSTLSAGRTLCLTPRSGSP 288
            ++TG ST G VS  S+  T  L+P S  P
Sbjct: 2746 SFTGSSTSGAVSPTSSASTASLSPTSRLP 2774


>SB_57162| Best HMM Match : DUF1086 (HMM E-Value=3.4)
          Length = 512

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 378 KPW-RNKNN-KAMLTFWNDRDHWL 443
           K W RN N  + ML+ W +R+HWL
Sbjct: 247 KNWFRNLNMCRKMLSHWQEREHWL 270


>SB_34962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 378 KPW-RNKNN-KAMLTFWNDRDHWL 443
           K W RN N  + ML+ W +R+HWL
Sbjct: 144 KNWFRNLNMCRKMLSHWQEREHWL 167


>SB_22733| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.8)
          Length = 203

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 378 KPW-RNKNN-KAMLTFWNDRDHWL 443
           K W RN N  + ML+ W +R+HWL
Sbjct: 144 KNWFRNLNMCRKMLSHWQEREHWL 167


>SB_1152| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4)
          Length = 216

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 408 MLTFWNDRDHWL 443
           ML+ WN+R+HWL
Sbjct: 5   MLSHWNEREHWL 16


>SB_57197| Best HMM Match : Transposase_21 (HMM E-Value=0.27)
          Length = 314

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 378 KPW-RNKNN-KAMLTFWNDRDHWL 443
           K W RN N  + ML+ W +R+HWL
Sbjct: 29  KNWFRNLNMCRKMLSHWQEREHWL 52


>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
          Length = 718

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 378 KPW-RNKNN-KAMLTFWNDRDHWL 443
           K W RN N  + ML+ W +R+HWL
Sbjct: 172 KNWFRNLNMCRKMLSHWQEREHWL 195


>SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 14  DRLRKRQRCLRKETLRWTRSLRH 82
           D LRK  R L+K  +R  R LRH
Sbjct: 189 DDLRKENRMLKKVNMRQERDLRH 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,134,223
Number of Sequences: 59808
Number of extensions: 309428
Number of successful extensions: 921
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)