Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K24
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar... 146 2e-36
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 3.1
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 27 3.1
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 5.5
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 25 7.2
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 25 7.2
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 9.5
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 9.5
>SPAC222.11 |hem13||coproporphyrinogen III oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 312
Score = 146 bits (355), Expect = 2e-36
Identities = 71/131 (54%), Positives = 89/131 (67%), Gaps = 3/131 (2%)
Frame = +3
Query: 270 QMEMLIMRIQAEFCRALEKEEDKDAKFKVDRWLRKDGGGGISCVLQDGRVFEKAGVNISV 449
QME LI+ +Q E LE + + KF D+W + +GG GISCV+QDG VFEK GVN S+
Sbjct: 12 QMEKLILDVQQEIVAGLEAVDGQ--KFFQDKWTKGEGGYGISCVIQDGNVFEKGGVNTSI 69
Query: 450 VSGTLPPAAVQQMRSRGKNLQNA--ELPFFAAGVSAVIHPRNPMVPTIHFNYRYFEVQDQ 623
V G L AVQ+MR+ + + ELPFFAAG+S VIHPRNPM PT H NYRYFE+ +
Sbjct: 70 VQGKLNQDAVQRMRANHEGIDRTAKELPFFAAGISMVIHPRNPMAPTTHLNYRYFELVNS 129
Query: 624 NGVQ-WWLGGG 653
+G + WW GGG
Sbjct: 130 DGKKIWWFGGG 140
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.6 bits (56), Expect = 3.1
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Frame = +3
Query: 12 DFVSKMSFKVIVQSFRTLSYV---SAYKTIKDKPYKLYCAALIGTGYVAYTQHKHNKAQM 182
+F +K + + ++ R + + S +T+KD A I Y++ + +A +
Sbjct: 52 EFWTKFAHEYYIRGLREQAILILKSGLETLKDSESLCILNANIAAIYLSMAR----EAML 107
Query: 183 KEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEEDKDAKFKVDR 362
K+ LR+ + E N+ D K+++ +L+ I +KE ++A D
Sbjct: 108 KKDTDLRDEQLRNVRTYLEAA-NNIDSKSEINVLLHGIYRILLNPTDKESLENAARCFDF 166
Query: 363 WLRKDGG 383
L+K GG
Sbjct: 167 VLQKSGG 173
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 558 HPRNPMVPTIHFNYRYFEVQDQNGVQWW 641
+ N + P IH+ Y D+N QWW
Sbjct: 163 YAENVIRPLIHYKYWPSSEVDENEEQWW 190
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +3
Query: 81 YKTIKDKPYKLYCAALIGTGYVAYTQHKHNKAQMKEILQLRNYMAEPITPATELEKNHHD 260
+ ++K + ++ + G +Y Q K KA + E+L + +P T A + E H+
Sbjct: 232 HSSLKKLSFLIFKVCIRLWGSQSYLQEK--KAGLAEVLNISTSQQKPKTTALDYEVFRHE 289
Query: 261 M 263
M
Sbjct: 290 M 290
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 183 KEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQ 299
+E++QL+N P K HD+K Q+E IQ
Sbjct: 587 EELMQLKNEETSINIPNETAVKEFHDLKLQLEKYGEEIQ 625
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +3
Query: 138 GYVAYTQHKHNKAQMKEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRA 317
G + + K Q +E + + A ELE+ K Q R+ +F +
Sbjct: 507 GVIKVSDEAKEKIQKEE--EYNKWFARKQQARVELEEQRRKKKEQD-----RLSGKFEKM 559
Query: 318 LEKEEDKDAKFKVDRWLRK 374
+KE ++ AK + +RW +K
Sbjct: 560 TQKEREQYAKKENERWDKK 578
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 454 ETTDIFTPAFSNTLPSCSTQLIPP 383
E+ D F PAF + C T+L+ P
Sbjct: 296 ESLDAFLPAFYDVYFQCRTRLLKP 319
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 482 ADEEPW*KSSK--RRASVLRGRSQRSDPSAESDGAHYSFQLQILRSSRSKWC 631
A +PW ++ + A RG R DP+A + G H+ L S+ S+ C
Sbjct: 636 ATTQPWIQAPEYVMMAGTGRGIPVRVDPTALAPGHHFGKVLAYDASNESRRC 687
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,937
Number of Sequences: 5004
Number of extensions: 57269
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -