Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K24
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1114 + 30995816-30996229,30997054-30997129,30997493-309975... 149 1e-36
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 30 1.4
08_01_0901 - 8873905-8874076,8874674-8874786,8875388-8875522,887... 30 1.9
03_02_0420 - 8298303-8299265,8299351-8299431,8299546-8299668,829... 30 1.9
09_01_0019 + 403078-404211 29 2.4
06_03_0689 + 23538367-23538474,23538583-23540557,23540647-23541092 29 3.2
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351... 29 3.2
02_02_0389 - 9617342-9617439,9617531-9617657,9619168-9619265,961... 29 3.2
06_01_1068 + 8715714-8716799,8716899-8717159 28 5.6
01_05_0446 - 22334291-22334751,22335304-22336191,22336290-223365... 28 5.6
08_02_0697 + 20144063-20144341,20144755-20145366 28 7.5
01_06_1469 - 37578597-37578700,37578893-37579019,37579177-375792... 28 7.5
09_01_0050 + 853712-855368,855440-856113 27 9.9
02_03_0230 + 16620856-16620991,16622157-16622239,16632090-166321... 27 9.9
01_06_0928 + 33085403-33089224 27 9.9
>04_04_1114 +
30995816-30996229,30997054-30997129,30997493-30997587,
30997729-30997812,30998094-30998181,30998485-30998609,
30998687-30998785,31000089-31000190,31001570-31001680
Length = 397
Score = 149 bits (362), Expect = 1e-36
Identities = 75/143 (52%), Positives = 95/143 (66%), Gaps = 12/143 (8%)
Frame = +3
Query: 261 MKAQMEMLIMRIQAEFCRALEKEEDKDAKFKVDRWLRKDGGGGISCVLQDGRVFEKAGVN 440
++ + E +I R+Q E C ALE+ + A+F D W R GGGGIS VLQDGRVFEKAGVN
Sbjct: 35 VRERFEAMIRRVQGEVCAALEEADGSGARFVEDVWSRPGGGGGISRVLQDGRVFEKAGVN 94
Query: 441 ISVVSGTLPPAAVQQMRSR-GKNLQNAE------LPFFAAGVSAVIHPRNPMVPTIHFNY 599
+SVV G +PP A + + GKN A+ +PFFAAG+S+V+HP+NP PT+HFNY
Sbjct: 95 VSVVYGVMPPDAYRAAKGEAGKNGAAADGPKAGPVPFFAAGISSVLHPKNPFAPTLHFNY 154
Query: 600 RYFEV---QDQNGV--QWWLGGG 653
RYFE +D G QWW GGG
Sbjct: 155 RYFETDAPKDAPGAPRQWWFGGG 177
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 445 DIFTPAFSNTLPSCSTQLIPPPP 377
D++ PAF + LP S L PPPP
Sbjct: 32 DMYMPAFLDQLPPSSHALYPPPP 54
>08_01_0901 -
8873905-8874076,8874674-8874786,8875388-8875522,
8875661-8875792,8876136-8876301,8877154-8877248,
8878983-8879104,8879283-8879403,8879556-8879633,
8879730-8879991,8880196-8880366,8881070-8881710
Length = 735
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 330 EDKDAKFKVDRWLRKDGGGG 389
ED++ ++ VDRWL ++ GGG
Sbjct: 168 EDEEVRWLVDRWLAEEDGGG 187
>03_02_0420 -
8298303-8299265,8299351-8299431,8299546-8299668,
8299815-8299983,8300108-8300478
Length = 568
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +3
Query: 177 QMKEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEEDKDAKFKV 356
Q K+ Q RN AE E+++ HH+++ + + + R +E+ DA+
Sbjct: 221 QGKQNEQARNVRAEQFVEQNEVKREHHEVQGRQRFVDEEVNPILARLSVQEQYADARMAA 280
Query: 357 D 359
+
Sbjct: 281 E 281
>09_01_0019 + 403078-404211
Length = 377
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +2
Query: 401 TARRKSVREGRSEYIRGLRNAASSGCSADEEPW*KSSKRRASVLRGRSQRSDPSAESD 574
T+R +S GRS++ R + + + +E K K R R R +RSD +ESD
Sbjct: 217 TSRHRSSSRGRSKHRRSTKRSDTEDDLEEERSKDKKKKSR----RKRHERSDEDSESD 270
>06_03_0689 + 23538367-23538474,23538583-23540557,23540647-23541092
Length = 842
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 570 PMVPTIHFNYRYFEVQDQNGVQWWLGG 650
P PTIH ++ +V G +WW GG
Sbjct: 145 PHGPTIHVRLQFKDVAADGGGKWWGGG 171
>04_01_0261 +
3516461-3516629,3517729-3517823,3518724-3518834,
3519179-3519213,3519864-3519954,3520124-3520196,
3521127-3521257,3524325-3524720
Length = 366
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = +3
Query: 156 QHKHNKAQMKEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEED 335
Q+K Q KE+++ + E PA L K H ++ + E L + + + +++ED
Sbjct: 278 QNKELSKQNKELMEQSKELME--LPA--LRKKHEELTKRYESLTKKRNEDLAKLRKEKED 333
Query: 336 KDAKFKVDR 362
+ FK ++
Sbjct: 334 QQVDFKKEK 342
>02_02_0389 -
9617342-9617439,9617531-9617657,9619168-9619265,
9619341-9619508,9620883-9620992,9622449-9622501,
9622638-9622859
Length = 291
Score = 29.1 bits (62), Expect = 3.2
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -2
Query: 298 CILMMSISICAFISWWFF 245
C+++ I++ +I+WWFF
Sbjct: 92 CVILFPIAVTFYITWWFF 109
>06_01_1068 + 8715714-8716799,8716899-8717159
Length = 448
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 372 KDGGGGISCVLQDGRVFEKAGVNISVVSGTLPPAAVQQMRSRGKNLQNAELPFFAAGVSA 551
+D +SC +DG V +++ + T PP +AEL FAA + A
Sbjct: 167 EDAAAAVSCCNEDGAVENPTKPSMTTTTATTPPLQFFPDGQANFGPTDAELREFAADMEA 226
Query: 552 VI 557
++
Sbjct: 227 LL 228
>01_05_0446 -
22334291-22334751,22335304-22336191,22336290-22336550,
22337129-22337588
Length = 689
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 372 KDGGGGISCVLQDGRVFEKAGVNI--SVVSGTLPPA 473
++GGGG V DG A V++ ++GTLPPA
Sbjct: 62 REGGGGFEGVACDGATGAVANVSLQGKGLAGTLPPA 97
>08_02_0697 + 20144063-20144341,20144755-20145366
Length = 296
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 374 RWRWRY*LCTARRKSVREGRSEYIRGL 454
RWRWR+ L T +V GR +GL
Sbjct: 199 RWRWRWRLATVAPVAVMVGRPSQPKGL 225
>01_06_1469 -
37578597-37578700,37578893-37579019,37579177-37579274,
37579373-37579540,37579872-37579981,37580072-37580124,
37581131-37581250
Length = 259
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/47 (21%), Positives = 17/47 (36%)
Frame = -2
Query: 388 PPPPSLRXXXXXXXXXXXXXXXXXXXXXXACILMMSISICAFISWWF 248
PP PS C+++ +++ FI+WWF
Sbjct: 28 PPRPSSPTTSTRKACCAVLQSWVSRKFMTGCVVLFPVAVTFFITWWF 74
>09_01_0050 + 853712-855368,855440-856113
Length = 776
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +3
Query: 324 KEEDKDAKFKVDRWLRKDGGGGISCVLQDGRV 419
KE AK K D KDGGGG V DG V
Sbjct: 423 KEGVVAAKAKTDDKKGKDGGGGAVLVTVDGEV 454
>02_03_0230 +
16620856-16620991,16622157-16622239,16632090-16632149,
16632795-16632903,16633285-16633337,16633503-16633559,
16633730-16633846
Length = 204
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 531 FAAGVSAVIHPRNPMVPTIHFNYRYFEVQDQNGVQ 635
FA +S + HP PM I F+++ +++++Q ++
Sbjct: 111 FAVALS-IFHPDTPMEDKIDFSFQLYDIKNQGFIE 144
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 261 MKAQMEMLIMRIQAEFCRALEKEEDKDAKFKVDRWLRK 374
M +++ L I +F +E E K K++RWLRK
Sbjct: 1 MVCELQELEATILPQFQLVIEAAEKSPHKGKIERWLRK 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,342,520
Number of Sequences: 37544
Number of extensions: 419648
Number of successful extensions: 1320
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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