Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K24
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33974| Best HMM Match : Coprogen_oxidas (HMM E-Value=0)            122   3e-33
SB_26282| Best HMM Match : Tctex-1 (HMM E-Value=3.1e-14)               31   0.82 
SB_31| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083)              30   1.4  
SB_7314| Best HMM Match : ApoC-I (HMM E-Value=3.6)                     30   1.9  
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)         29   2.5  
SB_2534| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=1.7)            28   5.8  
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                       28   5.8  
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)                        28   5.8  
SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                28   7.6  
SB_33365| Best HMM Match : MgtE (HMM E-Value=1.6e-07)                  28   7.6  
SB_32469| Best HMM Match : IQ (HMM E-Value=3.69943e-42)                28   7.6  

>SB_33974| Best HMM Match : Coprogen_oxidas (HMM E-Value=0)
          Length = 539

 Score =  122 bits (294), Expect(2) = 3e-33
 Identities = 55/82 (67%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
 Frame = +3

Query: 411 GRVFEKAGVNISVVSGTLPPAAVQQMRSRGKNLQNAELPFFAAGVSAVIHPRNPMVPTIH 590
           G+VFEKAGVN+SVV GTL   A QQM+SRGK  +  +LPFFA G+S+VIHPRNP VPT+H
Sbjct: 284 GKVFEKAGVNVSVVYGTLAAKAAQQMKSRGKGFKGEDLPFFACGISSVIHPRNPYVPTVH 343

Query: 591 FNYRYFEVQDQNGVQW-WLGGG 653
           FNYRYFEV D +G +  W GGG
Sbjct: 344 FNYRYFEVTDIDGQKHAWFGGG 365



 Score = 37.5 bits (83), Expect(2) = 3e-33
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +3

Query: 129 IGTG-YVAYTQHKHNKAQMKEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAE 305
           IG G Y+ +T     + ++ ++ Q   +M +P+T    LEKN   M+ +ME++I++ Q +
Sbjct: 228 IGIGSYIGFTAIHAREERIADVAQ--TFMGKPLTDIKTLEKNKDSMRTKMEVMILKAQGK 285


>SB_26282| Best HMM Match : Tctex-1 (HMM E-Value=3.1e-14)
          Length = 273

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +2

Query: 443 IRGLRNAASSGCSADE-EPW*KSSKRRASVLRGRSQRSDPSAESDGAHYSFQLQILRSSR 619
           IR L+ + +S  S DE E   ++S RR SVL   S R+  S+ S    +  Q Q+ ++SR
Sbjct: 68  IRRLKMSFTSCASNDEGEVDRRTSSRRLSVLSVESARTTASSRSPSIQHPGQPQMRKTSR 127

Query: 620 S 622
           S
Sbjct: 128 S 128


>SB_31| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083)
          Length = 902

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +3

Query: 180 MKEILQLRNYMAEPITPATELEKNHHDMKAQMEML---IMRIQAEFCRALEKEEDKDAKF 350
           M   L++++   +     T  E N+H +  Q+++    + R+ AEF   L+K+ED++ + 
Sbjct: 146 MSATLKMKDKQRKATLVNTSTEFNYHKVAKQLQLTRNEVARLTAEFEANLKKKEDEEFRL 205

Query: 351 K 353
           K
Sbjct: 206 K 206


>SB_7314| Best HMM Match : ApoC-I (HMM E-Value=3.6)
          Length = 281

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 503 KSSKRRASVLRG-RSQRSDPSAESDGAHYSFQLQILRSSRSKW 628
           ++SKRR  VLRG R ++ D   +++G+ Y       R  R KW
Sbjct: 160 EASKRRRKVLRGKRKKKEDKKKQAEGSLYDPGQFFRRFFRPKW 202


>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
          Length = 1177

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +3

Query: 180 MKEILQLRNYMAEPITPATELEKNHH-DMKAQMEMLIMRIQAEFCRALEKEEDKDAKFKV 356
           +KE+  L+N + + +    E EK H+ ++KA     I  +  +   A+ ++E  +AK   
Sbjct: 87  LKEVASLKNDL-QSMGEQLEREKAHNAELKAIKTQQISALTVKLATAIRQKEAAEAKMHP 145

Query: 357 DRWLRKDGGGGISCVLQDGRVFEKAGVNISV 449
              +  D    + C  QD +  E   +   V
Sbjct: 146 SH-MTNDSADPVPCQTQDAQETENVSLRNEV 175


>SB_2534| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=1.7)
          Length = 239

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 114 YCAALIGTGYVAYTQHKHNKAQMKEIL-QLRNYMAEP 221
           +C  LIG GY  + Q +  + Q  E L + R++M  P
Sbjct: 164 FCGGLIGGGYYNWQQQQREQLQQDEALRRYRDFMRMP 200


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 231 ATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEEDKDAKFKVDRWLRKDGGGGISC--VL 404
           A++ E+  H MK    +  + + +    A +KEE K+ + KV   +  D G   SC  V 
Sbjct: 659 ASKQEEKTHIMKCIYTICTLALASSLVFADKKEERKEQREKVGTVIGIDLGTTYSCVGVF 718

Query: 405 QDGRV 419
           ++GRV
Sbjct: 719 KNGRV 723


>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 1650

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 114  YCAALIGTGYVAYTQHKHNKAQMKEIL-QLRNYMAEP 221
            +C  LIG GY  + Q +  + Q  E L + R++M  P
Sbjct: 1575 FCGGLIGGGYYNWQQQQREQLQQDEALRRYRDFMRMP 1611


>SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 584

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 581 GHHRIPRMDHCADSGREERKLGVLKIFTTAPHLLNSRW 468
           G+H +P   H A  G  E+  G+  +FT    + N  W
Sbjct: 454 GYHEVPHGYHEAPHGYHEKTRGLKVLFTKMSLIRNGYW 491


>SB_33365| Best HMM Match : MgtE (HMM E-Value=1.6e-07)
          Length = 411

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
 Frame = +2

Query: 467 SSGCSADEEPW---*KSSKRRASVLRGRSQRSDPSAESDGAHYSF----QLQILRSSRSK 625
           +SGCS DEEP+    K+S  R + + G   + D S  ++           L+++R+   K
Sbjct: 64  TSGCSEDEEPFGRLLKTSHGRQTTMDGPEAKLDSSESNENLDLELLLPDNLELIRTKGDK 123

Query: 626 WCPVVVRWW 652
             P V   W
Sbjct: 124 -SPAVEETW 131


>SB_32469| Best HMM Match : IQ (HMM E-Value=3.69943e-42)
          Length = 416

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
 Frame = +3

Query: 120 AALIGTGYVAYTQHK----HNKAQMKEILQLRNYMAEPITPATELEKNHHD----MKAQM 275
           A  I  GY  YT  K     N+A MK   Q R Y        TE+E+   D    + AQ 
Sbjct: 126 ATKIQAGYHGYTCRKKIKHQNEAAMKIQSQYRGYKVRARLVMTEIERQDKDEGDSLSAQE 185

Query: 276 EMLIMRIQAEF 308
                +IQA F
Sbjct: 186 VKAATQIQAHF 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,423,346
Number of Sequences: 59808
Number of extensions: 448520
Number of successful extensions: 1129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)