Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K24
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-22|CAB55151.1|  331|Caenorhabditis elegans Hypothetical...    31   0.71 
Z68299-4|CAD60422.2|  367|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z50016-15|CAA90319.1|  329|Caenorhabditis elegans Hypothetical p...    29   2.9  
AL032621-9|CAA21496.1|  329|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF040655-8|AAB95047.1|  632|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U80442-6|AAB37669.1|  294|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical p...    28   6.7  
AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.     28   6.7  
AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.     28   6.7  
AL031254-1|CAA20282.1|  395|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF000261-8|AAB52929.1|  376|Caenorhabditis elegans T box family ...    28   6.7  
U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AL117204-22|CAB55151.1|  331|Caenorhabditis elegans Hypothetical
           protein Y116A8C.34 protein.
          Length = 331

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 258 DMKAQMEMLIMRIQAEFCRALEK-EEDKDAKFKVDRWLRKDGGGGISCVLQDGRVFEKAG 434
           D   + E+    I+  F R  +  E  +   +  D WL+K G GG +   +DG   EKA 
Sbjct: 70  DNMNESELFGKTIRVNFARPPKATERSQKPVWADDEWLKKYGRGGEAAAEEDGDA-EKAA 128

Query: 435 VNISVVSGTLP 467
            + S  S  LP
Sbjct: 129 TSSSSASTKLP 139


>Z68299-4|CAD60422.2|  367|Caenorhabditis elegans Hypothetical
           protein T04B2.7 protein.
          Length = 367

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 321 EKEEDKDAKFKVDRWLRKDGGGG 389
           EK+E K+ K K D  L+KD GGG
Sbjct: 99  EKKERKEEKVKKDEKLKKDDGGG 121


>Z50016-15|CAA90319.1|  329|Caenorhabditis elegans Hypothetical
           protein Y45F3A.1 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
 Frame = +3

Query: 165 HNKAQMKEI----LQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEE 332
           + KA  KEI     +  N + E I+   +L     + + + E+L MR  +     + + E
Sbjct: 118 NEKAMCKEIGHQEAEFENRLKEVISGRAQLTLKSEEAQKKCELL-MREHSNVYEDVREME 176

Query: 333 DKDAKFKVDRWLRKDGGGGISCVLQDGRVFEKAGV 437
           D   KF   RWL       +S +L   +   K G+
Sbjct: 177 DNIEKFDASRWLLNVEKRRVSDILDRTKREPKMGI 211


>AL032621-9|CAA21496.1|  329|Caenorhabditis elegans Hypothetical
           protein Y45F3A.1 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
 Frame = +3

Query: 165 HNKAQMKEI----LQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEE 332
           + KA  KEI     +  N + E I+   +L     + + + E+L MR  +     + + E
Sbjct: 118 NEKAMCKEIGHQEAEFENRLKEVISGRAQLTLKSEEAQKKCELL-MREHSNVYEDVREME 176

Query: 333 DKDAKFKVDRWLRKDGGGGISCVLQDGRVFEKAGV 437
           D   KF   RWL       +S +L   +   K G+
Sbjct: 177 DNIEKFDASRWLLNVEKRRVSDILDRTKREPKMGI 211


>AF040655-8|AAB95047.1|  632|Caenorhabditis elegans Hypothetical
           protein T24E12.10 protein.
          Length = 632

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +3

Query: 177 QMKEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCR 314
           Q ++  Q     A PI P+   + + H+M A+++ +   +QA+F +
Sbjct: 289 QTEDAQQFSVSSAVPIAPSIGKDDSQHEMSAEVQSMEPEVQADFAK 334


>Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical
           protein H12I19.4 protein.
          Length = 659

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 36  KVIVQSFRTLSYVSAYKTIKDKPYKLYCAALIGTGYV 146
           K++ ++   L ++SAY+  KDK  +     L+  GYV
Sbjct: 382 KIVEENLAMLPFISAYEPRKDKCVETSFQELVDNGYV 418


>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
           protein W02B8.2 protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 180 MKEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEEDKDAK 347
           ++E ++LR  MAE I    E ++N H  +   E L +  +    + L+ EE+   K
Sbjct: 569 LEENVKLRKGMAEAIEKIEEFKRNWHSSREAGERLQLEAKENEEKVLKVEEELQEK 624


>U80442-6|AAB37669.1|  294|Caenorhabditis elegans Hypothetical
           protein T20F5.7 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 9/154 (5%)
 Frame = +3

Query: 195 QLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEEDKDAKFKVDRWLRK 374
           QL  Y+AE      E +      K   ++L +++       +     KD +   + +LRK
Sbjct: 78  QLMGYLAEKEKFEREKKAKGGKPKKPDQVLTLKMARSNRMEIHVASKKDLEGP-ELYLRK 136

Query: 375 DGGGGISCVL-----QDGRVFEKAGVN-ISVVSGTLPPAAV-QQMRSRGKNLQNAELPFF 533
           D  G    V+         V +    N IS+ +G L P  V  + R+RG   + A++   
Sbjct: 137 DSEGNTHIVVAGLTGSPAEVMKFITENGISIETGVLMPQVVYDEGRTRGGTEKFAKVNSM 196

Query: 534 AAGVSAVIHPRNPM-VPTIHFNYRY-FEVQDQNG 629
           AAG SA+   + P+ +  + F+  +  +V +++G
Sbjct: 197 AAGQSAIKCTKPPVKLEELEFHKTFELKVSEESG 230


>Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical
           protein F22D6.12 protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 480 QQMRSRGKNLQNAELPFFAAGVSAVIHPR 566
           QQ R  GKN   + LP F + +SA+I PR
Sbjct: 240 QQARLTGKNENESPLPLFKSSLSAII-PR 267


>AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 480 QQMRSRGKNLQNAELPFFAAGVSAVIHPR 566
           QQ R  GKN   + LP F + +SA+I PR
Sbjct: 240 QQARLTGKNENESPLPLFKSSLSAII-PR 267


>AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 480 QQMRSRGKNLQNAELPFFAAGVSAVIHPR 566
           QQ R  GKN   + LP F + +SA+I PR
Sbjct: 156 QQARLTGKNENESPLPLFKSSLSAII-PR 183


>AL031254-1|CAA20282.1|  395|Caenorhabditis elegans Hypothetical
           protein 4R79.2 protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +3

Query: 150 YTQHKHNKAQMKEILQLRNYMAEPITP--ATELE--KNHHDMKAQMEMLIMRI 296
           Y +    + +M+EI Q ++Y+ +P+T     ELE  KN+ D + + E ++  I
Sbjct: 101 YLEESSLEDEMREIEQNKSYLDDPLTKILKKELEEIKNYEDFQVRNEQVLDNI 153


>AF000261-8|AAB52929.1|  376|Caenorhabditis elegans T box family
           protein 18 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 39  VIVQSFRTLSYVSAYKTIKDKPYKLYCAALIGTGYVAYTQ-HKHNKAQMKEILQLRNYMA 215
           ++  S R L  + AYK     P+KLYCA +      AY Q + H+  Q    L  +  + 
Sbjct: 188 MVFNSGRRLFPLLAYKVSGLDPHKLYCAGVHMIPDSAYKQEYDHDLQQWVNCLNQKKTIF 247

Query: 216 EP 221
           +P
Sbjct: 248 KP 249


>U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical
           protein C09F5.1 protein.
          Length = 571

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 51  SFRTLSYVSAYKTI-KDKPYKLYCAALIGTGYVAYTQHKHNKAQMK 185
           SF+++ + S Y+ I +     L  + LI  GYVAY  H    A  K
Sbjct: 347 SFQSIKHTSNYEEINRSNRIVLLPSILIRLGYVAYADHSLTDANGK 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,859,165
Number of Sequences: 27780
Number of extensions: 335892
Number of successful extensions: 997
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)