Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K24
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03205.1 68417.m00438 coproporphyrinogen III oxidase, putativ...   144   5e-35
At1g03475.1 68414.m00329 coproporphyrinogen III oxidase, putativ...   144   5e-35
At5g53930.1 68418.m06710 expressed protein                             30   1.5  
At2g40950.1 68415.m05056 bZIP transcription factor family protei...    29   2.7  
At2g19610.2 68415.m02291 zinc finger (C3HC4-type RING finger) fa...    28   4.7  
At2g19610.1 68415.m02290 zinc finger (C3HC4-type RING finger) fa...    28   4.7  
At1g63300.1 68414.m07156 expressed protein similar to Intracellu...    28   4.7  
At5g55990.1 68418.m06986 calcineurin B-like protein 2 (CBL2) ide...    28   6.2  
At2g20120.1 68415.m02351 expressed protein contains Pfam domain,...    28   6.2  
At2g30210.1 68415.m03674 laccase, putative / diphenol oxidase, p...    27   8.2  
At1g67590.1 68414.m07700 remorin family protein contains Pfam do...    27   8.2  
At1g52320.2 68414.m05905 expressed protein contains Pfam profile...    27   8.2  
At1g52320.1 68414.m05904 expressed protein contains Pfam profile...    27   8.2  

>At4g03205.1 68417.m00438 coproporphyrinogen III oxidase, putative /
           coproporphyrinogenase, putative / coprogen oxidase,
           putative
          Length = 233

 Score =  144 bits (349), Expect = 5e-35
 Identities = 66/149 (44%), Positives = 93/149 (62%), Gaps = 5/149 (3%)
 Frame = +3

Query: 222 ITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEEDKDAKFKVDRWLRKDGGGGISCV 401
           ++   + + + + ++A+ E +I   Q + C A+E  E+   KFK D W R  GGGGIS +
Sbjct: 67  VSDGDQTQSSSYSVRARFEKMIRTAQDKVCEAIEAVEE-GPKFKEDVWSRPGGGGGISRI 125

Query: 402 LQDGRVFEKAGVNISVVSGTLPPAAVQQMRSRGKNLQNAELPFFAAGVSAVIHPRNPMVP 581
           LQDG V+EKAGVN+SV+ G +PP A +  ++     +   +PFFAAG S+V+HP+NP  P
Sbjct: 126 LQDGNVWEKAGVNVSVIYGVMPPEAYRAAKAATSEQKPGPIPFFAAGTSSVLHPQNPFAP 185

Query: 582 TIHFNYRYFEVQDQNGV-----QWWLGGG 653
           T+HFNYRYFE      V     QWW GGG
Sbjct: 186 TLHFNYRYFETDAPKDVPGAPRQWWFGGG 214


>At1g03475.1 68414.m00329 coproporphyrinogen III oxidase, putative /
           coproporphyrinogenase, putative / coprogen oxidase,
           putative similar to coproporphyrinogen III oxidase,
           chloroplast [precursor] from Glycine max [SP|P35055],
           Nicotiana tabacum [SP|Q42946], Hordeum vulgare
           [SP|Q42840], ESTs gb|AA586260 and dbj|D48620; contains
           Pfam domain coproporphyrinogen III oxidase, aerobic
           [PF01218]
          Length = 362

 Score =  144 bits (349), Expect = 5e-35
 Identities = 72/152 (47%), Positives = 94/152 (61%), Gaps = 5/152 (3%)
 Frame = +3

Query: 213 AEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEEDKDAKFKVDRWLRKDGGGGI 392
           ++ +TP++    +   ++A+ E +I   Q   C A+E  E    KFK D W R  GGGGI
Sbjct: 68  SDDVTPSS----SSSSVRARFETMIRAAQDSVCDAIEAIEG-GPKFKEDVWSRPGGGGGI 122

Query: 393 SCVLQDGRVFEKAGVNISVVSGTLPPAAVQQMRSRGKNLQNAELPFFAAGVSAVIHPRNP 572
           S VLQDG VFEKAGVN+SVV G +PP A +  +    + +   +PFFAAGVS+V+HP+NP
Sbjct: 123 SRVLQDGNVFEKAGVNVSVVYGVMPPEAYRAAKGSASDQKPGPVPFFAAGVSSVLHPKNP 182

Query: 573 MVPTIHFNYRYFEVQDQNGV-----QWWLGGG 653
             PT+HFNYRYFE      V     QWW GGG
Sbjct: 183 FAPTLHFNYRYFETDAPKDVPGAPRQWWFGGG 214


>At5g53930.1 68418.m06710 expressed protein
          Length = 529

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
 Frame = +2

Query: 395 LCTARRKSVREGRSEYIRGLRNAA-SSGC-----SADEEPW*KSSKRRASVLRGRSQRSD 556
           L + ++K  +  +S+ IR +++ + SSG      S+ E+ + +  KRR+ + + RS++  
Sbjct: 18  LRSVKKKKSKRNKSKKIRRIKDESESSGSDSSLYSSSEDDYRRKKKRRSKLSKKRSRKRY 77

Query: 557 PSAESD 574
            S+ESD
Sbjct: 78  SSSESD 83


>At2g40950.1 68415.m05056 bZIP transcription factor family protein
           similar to AtbZIP transcription factor GI:17065880 from
           [Arabidopsis thaliana]; contains Pfam profile: bZIP
           transcription factor PF00170
          Length = 721

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 22/90 (24%), Positives = 40/90 (44%)
 Frame = +3

Query: 237 ELEKNHHDMKAQMEMLIMRIQAEFCRALEKEEDKDAKFKVDRWLRKDGGGGISCVLQDGR 416
           EL K+ +  KA+ +  +    A+  +  ++ + K A  ++ +W R+   G +      G 
Sbjct: 533 ELAKHLYRSKAEKQKALSSGSADTLK--DQVKTKAANGEMQQWFREGVAGPM---FSSGM 587

Query: 417 VFEKAGVNISVVSGTLPPAAVQQMRSRGKN 506
             E    ++S  SG + PAA       GKN
Sbjct: 588 CTEVFQFDVSSTSGAIIPAATNVSAEHGKN 617


>At2g19610.2 68415.m02291 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 418

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 126 LIGTGYVAYTQHKHNKAQMKEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAE 305
           ++G G      H + K ++ + L+ +   A P   A EL    H +K  +E+ I RIQ  
Sbjct: 70  VVGLGLSLCDSHDYTKQEINKALRNQKLAAHP--EAAELAAIIHGLKWALELGIERIQF- 126

Query: 306 FC 311
           FC
Sbjct: 127 FC 128


>At2g19610.1 68415.m02290 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 397

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 126 LIGTGYVAYTQHKHNKAQMKEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAE 305
           ++G G      H + K ++ + L+ +   A P   A EL    H +K  +E+ I RIQ  
Sbjct: 70  VVGLGLSLCDSHDYTKQEINKALRNQKLAAHP--EAAELAAIIHGLKWALELGIERIQF- 126

Query: 306 FC 311
           FC
Sbjct: 127 FC 128


>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]; similar to Myosin II heavy
           chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
           discoideum]
          Length = 1029

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/61 (21%), Positives = 29/61 (47%)
 Frame = +3

Query: 159 HKHNKAQMKEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEEDK 338
           +K  ++Q++E L+++   +  +   TELE     ++A+++          CR  E E   
Sbjct: 511 YKLEQSQLQEQLKIQYECSSSLVDVTELENQVESLEAELKKQSEEFSESLCRIKELESQM 570

Query: 339 D 341
           +
Sbjct: 571 E 571


>At5g55990.1 68418.m06986 calcineurin B-like protein 2 (CBL2)
           identical to calcineurin B-like protein 2 GI:3309084
           from [Arabidopsis thaliana]
          Length = 226

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 531 FAAGVSAVIHPRNPMVPTIHFNYRYFEVQDQNGVQ 635
           FA  +S V HP  P+   IHF+++ ++++ Q  ++
Sbjct: 107 FARALS-VFHPNAPIDDKIHFSFQLYDLKQQGFIE 140


>At2g20120.1 68415.m02351 expressed protein contains Pfam domain,
           PF04367: Protein of unknown function (DUF502); identical
           to cDNA putative membrane protein COV (COV) GI:30059123
          Length = 268

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -2

Query: 298 CILMMSISICAFISWWF 248
           C++++ I+I  +I+WWF
Sbjct: 71  CVILLPIAITFYITWWF 87


>At2g30210.1 68415.m03674 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 570

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 570 PMVPTIHFNYRYFEVQDQNGVQWW 641
           P+ P   + YR F+++DQ G  WW
Sbjct: 105 PIRPGQTYTYR-FKIEDQEGTLWW 127


>At1g67590.1 68414.m07700 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 347

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 246 KNHHDMKAQMEMLIMRIQAEFCRALEKEE 332
           +NH   KA+MEM  M ++AE  +A  +E+
Sbjct: 259 ENHEKRKAEMEMKKMEVKAERMKARAEEK 287


>At1g52320.2 68414.m05905 expressed protein contains Pfam profile:
           PF04782 protein of unknown function (DUF632)
          Length = 398

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/109 (19%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
 Frame = +3

Query: 18  VSKMSFKVIVQSFRTLSYVSAYKTIKDKPYKLYCAALI---GTGYVAYTQHKHNKAQMKE 188
           VS +  + IV      S VS    ++D+   L    L+   G  +     H   +A++ +
Sbjct: 86  VSHLHTRYIVDMQSMDSTVSEINRLRDEQLYLKLVHLVEAMGKMWEMMQIHHQRQAEISK 145

Query: 189 ILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEED 335
           +L+  + +++ +    E   +HH+   Q+  ++     +FCR ++ +++
Sbjct: 146 VLRSLD-VSQAVK---ETNDHHHERTIQLLAVVQEWHTQFCRMIDHQKE 190


>At1g52320.1 68414.m05904 expressed protein contains Pfam profile:
           PF04782 protein of unknown function (DUF632)
          Length = 398

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/109 (19%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
 Frame = +3

Query: 18  VSKMSFKVIVQSFRTLSYVSAYKTIKDKPYKLYCAALI---GTGYVAYTQHKHNKAQMKE 188
           VS +  + IV      S VS    ++D+   L    L+   G  +     H   +A++ +
Sbjct: 86  VSHLHTRYIVDMQSMDSTVSEINRLRDEQLYLKLVHLVEAMGKMWEMMQIHHQRQAEISK 145

Query: 189 ILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEED 335
           +L+  + +++ +    E   +HH+   Q+  ++     +FCR ++ +++
Sbjct: 146 VLRSLD-VSQAVK---ETNDHHHERTIQLLAVVQEWHTQFCRMIDHQKE 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,975,247
Number of Sequences: 28952
Number of extensions: 315917
Number of successful extensions: 956
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)