Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K22
(292 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 30 0.23
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 28 1.2
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 27 1.6
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera... 27 1.6
At1g14700.1 68414.m01757 purple acid phosphatase, putative conta... 27 2.2
At4g24150.1 68417.m03465 expressed protein ; expression supporte... 26 3.8
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 26 3.8
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 26 5.0
At5g59460.1 68418.m07452 scarecrow-like transcription factor 11 ... 25 6.6
At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR ... 25 6.6
At5g07400.1 68418.m00847 forkhead-associated domain-containing p... 25 6.6
At1g58440.1 68414.m06648 squalene monooxygenase, putative / squa... 25 6.6
At5g21080.1 68418.m02510 expressed protein predicted proteins - ... 25 8.8
At4g15393.1 68417.m02352 cytochrome P450 family protein similar ... 25 8.8
At3g48990.1 68416.m05351 AMP-dependent synthetase and ligase fam... 25 8.8
At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C... 25 8.8
At3g12060.1 68416.m01500 expressed protein similar to hypothetic... 25 8.8
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa... 25 8.8
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa... 25 8.8
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 140 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXPLARGG 289
++A P P+ P+ GP P+S+ PA N+P Y P GG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 152 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDXPLAR 283
P P S P N P ++ P + P+ +N P PP YD P R
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPGGR 402
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 173 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDXP 274
PS+ PS ++ P TGP+ + HP ++ P D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270
Score = 25.8 bits (54), Expect = 5.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 149 NPDPFFSQPSNGPSGNYEPISTGP 220
NP+P++S P + P+ + S+ P
Sbjct: 316 NPEPYYSSPHSAPAPSSTSFSSAP 339
>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 456
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 12 SDTIRQ*KLSCFSSSPYWPWLP 77
S I + + SC SSP+ PW+P
Sbjct: 96 SKIIEEKRYSCIISSPFTPWVP 117
>At1g14700.1 68414.m01757 purple acid phosphatase, putative contains
Pfam profile: PF00149 calcineurin-like phosphoesterase;
similar to purple acid phosphatase (GI:20257479)
[Arabidopsis thaliana]
Length = 366
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 118 RWNTTIVHHVNSVCGSHGQYGEEEKH 41
+W I HH G HG E EKH
Sbjct: 239 KWKIVIGHHTIKSAGHHGNTIELEKH 264
>At4g24150.1 68417.m03465 expressed protein ; expression supported
by MPSS
Length = 493
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 80 NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 226
N+ + +SG+ + S + DPFFS S+G G AF
Sbjct: 102 NQAYTSSHSGMFTPAGSGSAAVTVADPFFSLSSSGEMRRSMNEDAGAAF 150
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = +2
Query: 104 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP 244
SG SD + F ++G SG Y P GP V P
Sbjct: 4 SGYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFP 50
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 149 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 256
+P P S PS+ P + P S P + + P PP
Sbjct: 37 SPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPP 72
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 149 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 256
+P P S PS+ P + P S P + + P PP
Sbjct: 86 SPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPP 121
>At5g59460.1 68418.m07452 scarecrow-like transcription factor 11
(SCL11) identical to cDNA scarecrow-like 11 (SCL11)
mRNA, partial cds gi:4580526
Length = 172
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +2
Query: 101 NSGVPSDGNSD--HVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXP 274
N G PS +S+ + P+ +PS G+ + + + N PN P+ +D P
Sbjct: 82 NGGNPSSSSSNGGKKSFSEPESSKVEPSGETDGDLKRKQSEVVSEEQNRPNKSPRSFDKP 141
>At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 843
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 214 WTGVRRFQSSQLSTQAIRXPSRPWWE 291
W G RR Q S ++ + PS PW++
Sbjct: 720 WEGKRRDQYSPSTSSSEITPSNPWFK 745
>At5g07400.1 68418.m00847 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1084
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 101 NSGVPSDGNSDHVVIANPD 157
N+ VP+D N+ V++ NPD
Sbjct: 661 NTNVPADPNAVRVLVPNPD 679
>At1g58440.1 68414.m06648 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021
Length = 531
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 92 VVDNSGVPSDGNSDHVVIANPDPFFSQP 175
V++N +P N HVV+A+P P P
Sbjct: 244 VLENCNLPY-ANHGHVVLADPSPILMYP 270
>At5g21080.1 68418.m02510 expressed protein predicted proteins -
Arabidopsis thaliana; expression supported by MPSS
Length = 980
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 107 GVPSDGNSDHVVIANPDPFFSQPSNGPSGNY 199
G P+ N N PFF+ PS+ P N+
Sbjct: 940 GAPAASNICVTEYQNQPPFFNPPSSTPFDNF 970
>At4g15393.1 68417.m02352 cytochrome P450 family protein similar to
Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
[Arabidopsis thaliana]; contains Pfam PF00067:
Cytochrome P450
Length = 399
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 191 GNYEPISTGPAFVDFNHPNYPPKRYDXPLA 280
G+Y I G F+ + + ++ P++YD PLA
Sbjct: 363 GDYT-IPAGWIFMGYPYVHFNPEKYDDPLA 391
>At3g48990.1 68416.m05351 AMP-dependent synthetase and ligase family
protein similar to peroxisomal-coenzyme A synthetase
(FAT2) [gi:586339] from Saccharomyces cerevisiae;
contains Pfam AMP-binding enzyme domain PF00501;
identical to cDNA; identical to cDNA adenosine
monophosphate binding protein 3 AMPBP3
(AMPBP3)GI:20799714
Length = 514
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 45 FSSSPYWPWLPQTEFTWWTIV 107
FS++ +WP + + TW+T V
Sbjct: 240 FSATTFWPDMKKYNATWYTAV 260
>At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C2H2
type) family protein identical to superman protein
GB:S60325 from [Arabidopsis thaliana]; contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 204
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +2
Query: 113 PSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNY 250
PS ++ NP+ +S +N P ++ P++ P + P Y
Sbjct: 82 PSSSSTPSPPYPNPNYSYSTMANSPPPHHSPLTLFPTLSPPSSPRY 127
>At3g12060.1 68416.m01500 expressed protein similar to hypothetical
protein GB:CAB82953 GI:7340710 from [Arabidopsis
thaliana]
Length = 556
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 206 ISTGPAFVDFNHPNYPPKRYDXPLARGGK 292
IS G VDF + PK+ P GGK
Sbjct: 227 ISNGRPDVDFQKLKWKPKQCSLPRLNGGK 255
>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 95 VDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGN 196
VD+ VP G S + P+P + P N P N
Sbjct: 434 VDSLFVPRAGPSSAIHTPQPNPTWIPPQNAPPHN 467
>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 95 VDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGN 196
VD+ VP G S + P+P + P N P N
Sbjct: 434 VDSLFVPRAGPSSAIHTPQPNPTWIPPQNAPPHN 467
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,639,722
Number of Sequences: 28952
Number of extensions: 127683
Number of successful extensions: 382
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 271967544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -