Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K21
(467 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g30755.1 68416.m03925 hypothetical protein 28 3.6
At3g50910.1 68416.m05574 expressed protein 27 4.8
At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pin... 27 6.3
At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pin... 27 6.3
At5g06550.1 68418.m00739 transcription factor jumonji (jmjC) dom... 27 6.3
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 27 6.3
At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein si... 27 8.4
At4g17980.1 68417.m02676 no apical meristem (NAM) family protein... 27 8.4
At2g12695.1 68415.m01374 hypothetical protein 27 8.4
At1g19900.1 68414.m02495 glyoxal oxidase-related contains simila... 27 8.4
>At3g30755.1 68416.m03925 hypothetical protein
Length = 162
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 234 NGTRRIFKRSSLTRTGRSRASSCTKTLTAVIYSTTS 341
N I S++R GR S C L VIY++TS
Sbjct: 4 NSENSISSTQSVSRWGRGLPSKCHHGLDVVIYTSTS 39
>At3g50910.1 68416.m05574 expressed protein
Length = 447
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 119 PDRHCLPVRPSKWPPSKGILRIWSRRPSLLL 27
PD LP PS +PPS I+ SR P LL
Sbjct: 66 PDAIPLPNSPSSFPPSPYIINHKSRGPPRLL 96
>At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 275 DREVESVVVHKDFNGGNLFYDVGILFLKSPMELTP 379
D + + V V D +GGN+ + + + F +ELTP
Sbjct: 157 DVDFDRVFVVGDSSGGNIAHQLAVRFGSGSIELTP 191
>At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 275 DREVESVVVHKDFNGGNLFYDVGILFLKSPMELTP 379
D + + V V D +GGN+ + + + F +ELTP
Sbjct: 157 DVDFDRVFVVGDSSGGNIAHQLAVRFGSGSIELTP 191
>At5g06550.1 68418.m00739 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam PF00646: F-box
domain; contains Pfam PF02373: jmjC domain; similar to
apoptotic cell clearance receptor PtdSerR (GI:11037740)
[Mus musculus]
Length = 319
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 319 AVKVFVHDDALDLPVLVREDLLNILRVPFPRPRAQLLG 206
A KV V D D+PV REDL +L P R ++G
Sbjct: 95 AEKVPVLDSEYDVPVYFREDLFGVLGNERPDYRWIIIG 132
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.1 bits (57), Expect = 6.3
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +1
Query: 97 TGKQ*RS-GRSKTERVRRRRIPDTPERCSHRSA*RRKDPGVAREGG---GMGHAEYLRDL 264
+G + RS GRS++ + R R P P R R P R GG G Y R
Sbjct: 145 SGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRSYSPAPRRRGGPPRGEEDENYSRRS 204
Query: 265 PLPGQGG 285
PG G
Sbjct: 205 YSPGYEG 211
>At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein
similar to lysosomal alpha-mannosidase SP:O09159 from
[Mus musculus]
Length = 1047
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 171 LGCIRDPPPTYTFSFRPSGSSLFTGSTFKMATI 73
+G +DP + + FRP+GS + S+ K+ T+
Sbjct: 651 VGDAKDPQVSGAYIFRPNGSLAYPVSSSKICTV 683
>At4g17980.1 68417.m02676 no apical meristem (NAM) family protein
NAM (GI:6066595) [Petunia x hybrida]
Length = 262
Score = 26.6 bits (56), Expect = 8.4
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +3
Query: 207 PRSCARGRGNGTRRIFKRSSLTRTGRSRASSCTKTLTAVIYSTTSVYYS*R 359
PR G+ T R K TG+ R +C + Y T V+Y R
Sbjct: 69 PRDKKYANGSRTNRATKAGYWKATGKDRKITCKSSHVIAGYRKTLVFYEGR 119
>At2g12695.1 68415.m01374 hypothetical protein
Length = 130
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 234 NGTRRIFKRSSLTRTGRSRASSCTKTLTAVIYSTTS 341
N I S++R GR S C L VIY++TS
Sbjct: 4 NFDNSIASTQSVSRWGRGLPSKCNCGLDVVIYTSTS 39
>At1g19900.1 68414.m02495 glyoxal oxidase-related contains
similarity to glyoxal oxidase precursor [Phanerochaete
chrysosporium] gi|1050302|gb|AAA87594
Length = 548
Score = 26.6 bits (56), Expect = 8.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 5 PEGVGFKTTGERDGETKFGEFPWMVAILKVEPVNNDDPDGLKLN 136
P+GV +T G+RDGE K F P NN+ D +++N
Sbjct: 120 PDGVLVQTGGDRDGELKTRTF---------SPCNNNQCDWVEMN 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,509,906
Number of Sequences: 28952
Number of extensions: 246495
Number of successful extensions: 771
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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