Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K20
(491 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 61 6e-10
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 55 3e-08
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 33 0.17
SB_52654| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_8304| Best HMM Match : PLAT (HMM E-Value=0) 27 8.4
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 63.7 bits (148), Expect = 8e-11
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Frame = +2
Query: 131 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 310
+CY+ + + R + LP D++P L CTH++Y A I T K+ + N D
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWNDD-----R 453
Query: 311 NYRAITNLKRQFPQLRVFLTVGGDDDTEDP-QKYNLLLESPQARTAFTNSALLLAEHYGF 487
Y+ I +LK + P L+ L VGG + P ++ ++ S RT F +S L L++ Y F
Sbjct: 454 LYKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDF 513
Query: 488 D 490
D
Sbjct: 514 D 514
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 60.9 bits (141), Expect = 6e-10
Identities = 36/119 (30%), Positives = 57/119 (47%)
Frame = +2
Query: 134 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHAN 313
CYY + S R P D++P L CTH+L+ A + T+K+ EN H
Sbjct: 25 CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHEL 77
Query: 314 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEHYGFD 490
Y+ I LK+ P+L+ + VGG E ++ ++ + + R F SA+ +GFD
Sbjct: 78 YQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHGFD 136
Score = 54.8 bits (126), Expect = 4e-08
Identities = 34/120 (28%), Positives = 57/120 (47%)
Frame = +2
Query: 131 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 310
+CYY + S R P D++P L CTH+++ + + T+ M +N D D
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-DFDL--- 462
Query: 311 NYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEHYGFD 490
Y+ I LK+ P+L+ + VGG E ++ ++ + + R F SA+ GFD
Sbjct: 463 -YKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFD 521
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 55.2 bits (127), Expect = 3e-08
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Frame = +2
Query: 131 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGI-QADTYKMVSLNENLDIDRAH 307
+CY+ + S R+ +A+ P D+ PA CTHL+Y A I Q + M N+ D+ +
Sbjct: 22 VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLY 75
Query: 308 ANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEHYGF 487
+ A LK++ P+L+ L VGG + ++ ++++ R F +S + + +GF
Sbjct: 76 PRFNA---LKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGF 132
Query: 488 D 490
D
Sbjct: 133 D 133
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 45.2 bits (102), Expect = 3e-05
Identities = 32/120 (26%), Positives = 58/120 (48%)
Frame = +2
Query: 131 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 310
+CYY + + R A+ P +++P+L CTH++Y A + AD K+ N A
Sbjct: 25 VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN-----DAA 76
Query: 311 NYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEHYGFD 490
Y+ + +LK ++ L VGG + P + ++ + R F + A+L ++ FD
Sbjct: 77 MYKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFD 133
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +2
Query: 314 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEHYGFD 490
Y+ +LK + P L+ L VGG + ++ ++ + +R F +S++ + + FD
Sbjct: 187 YKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFD 245
>SB_52654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +3
Query: 111 LVAKAKSSATMTARAISENLKHVCCLRTWSLLF 209
LVA+ K++ TAR + + +H+ + W++++
Sbjct: 65 LVARCKNALIQTARTVVKRHRHMIAQQRWTVVY 97
>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1182
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 276 SETILYVSAWMPADLYSRWVQNERAGSKSVGSI 178
+ T++ +AW D Y W+Q + G+ V S+
Sbjct: 398 ASTVIIDTAWCAGDSYDCWLQVDLGGTHCVTSV 430
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,965,120
Number of Sequences: 59808
Number of extensions: 268234
Number of successful extensions: 827
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -