Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K19
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   0.84 
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    25   4.5  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    25   4.5  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   5.9  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    25   5.9  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   5.9  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 9   LFIQNYSDNII*AYCYLL-FKLVILNAIPFTMVNYNNFVYFC 131
           +FI  Y  N++  +C+   F L    +  FT +++N F   C
Sbjct: 95  IFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRLC 136


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = +3

Query: 171 WIKNDKIWPTRSKILKKCVVEXXXXXXXXXXXXINYSVLTSIQSNFCIHCRVFQYNIFD 347
           + K+ K W  +S+ L  C+ +             N + L + +      CRVFQY  ++
Sbjct: 289 YAKSQKKW-IQSRFLPMCLAQQDLSPSSILFSTTNTTDLNNWEEQVEKACRVFQYFFYN 346


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 437 KIVLELDGSLIYYFHISC*SLQCIFKPSSIVKYVILKNSTMNTKIA 300
           K ++++ G    Y   S     CI  PSS ++Y++  +S  + KI+
Sbjct: 174 KRIVQVPGGRRIYTVDSITGQVCILDPSSNIEYLVSPDSVASVKIS 219


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 301 LCMLVNTE*LINLNNFYFLQSLNSTTHFFNIL 206
           +C   NTE   N+  + F  S NS    FNIL
Sbjct: 468 ICYTGNTESRANIREYEFYLSTNSRKLKFNIL 499


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 304 LLCMLVNTE*LINLNNFYFLQSLNSTTHF 218
           +LC++  T+  I   N YF+Q LN+T+ F
Sbjct: 28  ILCIINQTQHNIAFQNIYFIQ-LNTTSIF 55


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -3

Query: 377 LQCIFKPSSIVKYVILKNSTMNTKIALYAC*HRVINKFE*FLFFTILKLNYTFF*YFRSC 198
           L  IF+  S   ++I   S    K+A+Y   ++ +      + + +  LN  +  YF SC
Sbjct: 399 LDAIFQ--SYAYWIIGSLSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYMNYFASC 456

Query: 197 W 195
           W
Sbjct: 457 W 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,315
Number of Sequences: 5004
Number of extensions: 34915
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)