Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K19
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032623-13|CAA21504.1|  465|Caenorhabditis elegans Hypothetical...    27   7.0  
Z72508-8|CAA96640.2|  366|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U29515-1|AAC06328.1|  449|Caenorhabditis elegans fem-2 protein.        27   9.2  
U28412-8|AAC46598.1|  449|Caenorhabditis elegans Feminization of...    27   9.2  
AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm rece...    27   9.2  

>AL032623-13|CAA21504.1|  465|Caenorhabditis elegans Hypothetical
           protein Y43F8B.13 protein.
          Length = 465

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 21/102 (20%), Positives = 42/102 (41%)
 Frame = +3

Query: 48  YCYLLFKLVILNAIPFTMVNYNNFVYFCISNSK**LEPRSIWIKNDKIWPTRSKILKKCV 227
           +  L + L + +  P+  V YN  V+   + +   L P  + + ++ IW   ++ +KK  
Sbjct: 172 FAALAWNLSVESTPPY--VRYNAQVFLTKAENMLVLTPPDVVLFSELIWGAAARCIKKLF 229

Query: 228 VEXXXXXXXXXXXXINYSVLTSIQSNFCIHCRVFQYNIFDYA 353
            +             NY  +  + S+F   C +FQ  +   A
Sbjct: 230 FDNFKITITSHSDIFNY--MDEVLSHF--PCNLFQRGVLSKA 267


>Z72508-8|CAA96640.2|  366|Caenorhabditis elegans Hypothetical
           protein F28H7.9 protein.
          Length = 366

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 422 LDGSLIYYFHISC*SLQCIFKPSSIVKYVILKNSTMNTKIALYA 291
           + GS+++ F+++C SL  +   S   K VI+ N + N    +YA
Sbjct: 234 IQGSILF-FNVACVSLLVLENVSMNDKMVIVSNVSFNILCTIYA 276


>U29515-1|AAC06328.1|  449|Caenorhabditis elegans fem-2 protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 87  IPFTMVNYNNFVYFCISNSK**LEPRSIWIKNDKIWPTRSKILKK 221
           + F  V YN  +Y   S +    E + ++  NDKIWP   KIL++
Sbjct: 108 VAFRDVQYNPDIYVTDSTT----EAKKLF--NDKIWPAIDKILQQ 146


>U28412-8|AAC46598.1|  449|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 2 protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 87  IPFTMVNYNNFVYFCISNSK**LEPRSIWIKNDKIWPTRSKILKK 221
           + F  V YN  +Y   S +    E + ++  NDKIWP   KIL++
Sbjct: 108 VAFRDVQYNPDIYVTDSTT----EAKKLF--NDKIWPAIDKILQQ 146


>AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 31 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 229 LSLRIVKNKNYSNLLITLC*QAYKAIFVFIVEFFNITYL 345
           ++  +VK K  S  LIT    +Y  ++  IV FF + +L
Sbjct: 76  INFNMVKWKWLSEELITFIVVSYSGLYATIVSFFTVMFL 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,776,958
Number of Sequences: 27780
Number of extensions: 185146
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)