Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K18
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049... 33 0.091
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 33 0.16
02_01_0721 - 5373449-5373603,5373912-5373981,5374473-5374620,537... 32 0.21
02_05_1261 + 35305909-35307042,35307779-35307968,35308550-35308818 29 2.6
01_01_1097 + 8682250-8682337,8682406-8682474,8683014-8683222,868... 29 2.6
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378... 28 4.5
05_03_0416 + 13684604-13688050 28 4.5
08_02_0676 - 19943638-19943895,19944296-19944632,19944711-19945063 27 6.0
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 27 7.9
>03_04_0020 -
16504322-16504654,16504758-16504785,16504937-16504989,
16505377-16505463,16505636-16505704,16506071-16506145,
16507040-16507210,16507693-16507793,16508062-16508139,
16508492-16508648,16508737-16509006,16509369-16509485,
16510250-16510339,16510417-16510629,16510742-16510891,
16511929-16512342
Length = 801
Score = 33.5 bits (73), Expect = 0.091
Identities = 25/123 (20%), Positives = 52/123 (42%)
Frame = +3
Query: 72 PIIIFLTDGDPTVGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRKLCLLNDG 251
P I +TDG +T+ + L + + + F GLG N+ FLR L + G
Sbjct: 431 PQIFLVTDGSVEDERNICRTVKEQLATRGSKSPRISTF--GLGSYCNHYFLRMLASIGKG 488
Query: 252 FSRRIYEAADAALQLSDFYRQVSSPLLAHVNFVYPSDQVNEETTTKHKFRTFYAGSELVV 431
++ ++ ++++ SS ++ +++ + + + E + A L V
Sbjct: 489 HYDAAFDTGSIEGRMVQWFQKASSTIVINIS-IDATKYIREFEVDSEYIQDISAKCPLCV 547
Query: 432 AGR 440
+GR
Sbjct: 548 SGR 550
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +3
Query: 39 DEVKEKVKTLEPIIIFLTDGDPTVGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVNNK 218
+ ++EK P+I+ + + K+++ H T KNK ++F L D +
Sbjct: 1813 NRIREKYPDRIPVIVEKAERSDIPDIDKKKSVLNHFTFKNKSSATLSLFVLASYVDTSFF 1872
Query: 219 FLRKLCLLN 245
L K+ L N
Sbjct: 1873 MLLKIVLAN 1881
>02_01_0721 -
5373449-5373603,5373912-5373981,5374473-5374620,
5374755-5374870,5374955-5375033,5375163-5375233,
5376201-5376344,5376439-5376592,5376906-5376941,
5377145-5377226,5377315-5377408,5377993-5378062,
5378177-5378274,5378745-5378827,5379335-5379428,
5379533-5380036
Length = 665
Score = 32.3 bits (70), Expect = 0.21
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 8/46 (17%)
Frame = +3
Query: 96 GDPTVGVTSTKTIIKHL-TEKNKGENKA-------TMFCLGLGDDV 209
G+PTVG T +TI++HL T+K + N+A T+ +G+ +DV
Sbjct: 261 GEPTVGKTQPETILRHLTTKKGQAYNRAQVKRDVETILTMGIMEDV 306
>02_05_1261 + 35305909-35307042,35307779-35307968,35308550-35308818
Length = 530
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 279 DAALQLSDFYRQVSSPLLAHVNFVYPSDQVNEETTTKHKF 398
+AA+ L ++R +S V P+D V EE T H+F
Sbjct: 195 NAAILLCLYWRHLSDEKCVEVVAPVPTDVVEEEDVTSHRF 234
>01_01_1097 +
8682250-8682337,8682406-8682474,8683014-8683222,
8683468-8683657,8684619-8685010,8685610-8686098
Length = 478
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 153 KNKGENKATMFCLGLGDDVNNKFLRKLCLLNDGFSRRIYEA 275
+NKG +AT+F L D N F + CLL G +Y+A
Sbjct: 77 RNKGHGEATIFTLRELADATNNFSTE-CLLGRGGFGSVYKA 116
>11_01_0490 -
3782195-3782305,3782929-3783021,3783199-3783294,
3783373-3783521,3783886-3784039,3784110-3784205,
3784290-3784379,3784856-3785014,3785150-3785371,
3785552-3785668,3785753-3785824,3786768-3786836,
3786947-3787051,3787248-3787562,3787814-3788809
Length = 947
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 320 GHLSVK-VTQLKRRVSCLVDTSRETIV 243
GH+ V QLK R +CL+DT E ++
Sbjct: 766 GHIDADGVLQLKGRAACLIDTGDELLI 792
>05_03_0416 + 13684604-13688050
Length = 1148
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +3
Query: 129 TIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRKLCLLN---DGFSRRIY 269
TI+ L + N+GEN + +GLG + +C +N + F RI+
Sbjct: 65 TIVSMLVDSNEGENCWIVSVVGLGGSGKTTLAKHICHVNKIKELFKERIF 114
>08_02_0676 - 19943638-19943895,19944296-19944632,19944711-19945063
Length = 315
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 93 DGDPTVGVTSTKTII---KHLTEKNKGENKATMFCLGLGDD 206
DG+P +S+ TI+ K +TE + + T+ LG+G+D
Sbjct: 112 DGNPEFWCSSSDTIVSFAKKMTELERAVERMTLEGLGVGED 152
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 262 RREKPSLRRHNFRKNLLFTSSPKPRQNIV 176
+ +K RH F+ L TS P+ RQN+V
Sbjct: 180 KEKKWKAMRHTFKSKGLPTSHPEKRQNVV 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,775,295
Number of Sequences: 37544
Number of extensions: 220265
Number of successful extensions: 527
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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