Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K18
(484 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_2181| Best HMM Match : RGS (HMM E-Value=0.11) 29 2.7
SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24) 28 3.5
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 4.6
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 6.1
SB_47117| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_53838| Best HMM Match : DUF745 (HMM E-Value=0.31) 27 8.1
SB_30762| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39) 27 8.1
>SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 69 EPIIIFLTDGDPTVGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRK 230
E +I F+ + T + S + + K L +K K KAT C G DVN K K
Sbjct: 304 EIVITFVKPPEQTKELLSLQALTKRLGQK-KDLVKATNLCSGRSSDVNKKRAHK 356
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 90 TDGDPT-VGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRKLC 236
+D + T VG T+T + + GEN + + L D N +F KLC
Sbjct: 1322 SDAESTSVGNTATAAVAATTAKPRIGENVGPEYIVRLADSGNRQFYCKLC 1371
>SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)
Length = 1313
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = -1
Query: 259 REKPSLRRHNFRKNLLFTSSPKPRQNIVALFSPLFFSVRCLMIVLVLVTPTVG-----SP 95
R+KP + +++L + R++IVA+ + + ++I++++V + SP
Sbjct: 1031 RQKPKVSAPEVVEDILLKRRLQRRRDIVAIIIIIIINAIVIIIIIIIVMIIIAIVLLTSP 1090
Query: 94 SVRNMIIGSRVLTFS 50
V N I+ SR ++ S
Sbjct: 1091 PVLNYILNSRWVSSS 1105
>SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)
Length = 1592
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +3
Query: 156 NKGENKATMFCLGLGDDVNNKFLRKLCLLNDGFSRRIYEAADAALQLSDFYRQVSSPLLA 335
NK N T L +D +F KL N+G+ +R+ + + Q+ ++Y ++S ++
Sbjct: 212 NKYMNPRTRIFSYLTNDKGEEFPGKLSCDNNGYMKRLVDNENIISQMQEYYSFLASNAIS 271
Query: 336 HVNFVY 353
N +
Sbjct: 272 INNVTW 277
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 75 IIIFLTDGDPTVGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRKL 233
++I +T+G + G K ++K L EK K + +G+G DVN L ++
Sbjct: 1230 VLIVMTNGRTSQGSLPYKDVMKPLKEK-----KVDVIAVGIGPDVNEAELLEI 1277
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 75 IIIFLTDGDPTVGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVN 212
++I +T+G + G K ++K L EK K + +G+G DVN
Sbjct: 1489 VLIVMTNGRTSQGSLPYKDVMKPLKEK-----KVDVIAVGIGPDVN 1529
>SB_47117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 36 LDEVKEKVKTLEPIIIFLTDGDPTVGVTSTKTIIKHLTEKNK-GENKATMFCLGLG 200
L+ E + +IIFLTD PT +++++ + E NK +N+ + G+G
Sbjct: 242 LNSKPESPDDCDQVIIFLTDVKPT---ELKESVMRTIVESNKLLDNRVVILAYGIG 294
>SB_53838| Best HMM Match : DUF745 (HMM E-Value=0.31)
Length = 387
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 276 ADAALQLSDFYRQVSSPLLAHVNFVYPSDQVNEE 377
A A +D +RQV+S LAH++ DQ+ +E
Sbjct: 57 AKTAKAATDHFRQVTSDFLAHLSSSNNKDQILKE 90
>SB_30762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 276 ADAALQLSDFYRQVSSPLLAHVNFVYPSDQVNEE 377
A A +D +RQV+S LAH++ DQ+ +E
Sbjct: 57 AKTAKAATDHFRQVTSDFLAHLSSSNNKDQILKE 90
>SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)
Length = 1607
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 276 ADAALQLSDFYRQVSSPLLAHVNFVYPSDQVNEE 377
A A +D +RQV+S LAH++ DQ+ +E
Sbjct: 57 AKTAKAATDHFRQVTSDFLAHLSSSNNKDQILKE 90
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,040,324
Number of Sequences: 59808
Number of extensions: 269242
Number of successful extensions: 655
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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