Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K18
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51000.1 68418.m06323 F-box family protein contains F-box dom...    31   0.31 
At2g05410.1 68415.m00569 ubiquitin-specific protease-related / m...    28   2.9  
At2g38770.1 68415.m04760 expressed protein                             28   3.8  
At2g32630.1 68415.m03983 pentatricopeptide (PPR) repeat-containi...    27   5.0  
At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA he...    27   5.0  
At1g49360.1 68414.m05533 F-box family protein contains Pfam PF00...    27   5.0  
At1g57990.1 68414.m06572 purine permease-related low similarity ...    27   6.6  
At3g13790.1 68416.m01742 beta-fructosidase (BFRUCT1) / beta-fruc...    27   8.8  

>At5g51000.1 68418.m06323 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 378

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -3

Query: 269 VDTSRETIVKKAQLS*KLIVYIVS*TEAEHSSFVLSFIFFCEMFNDS 129
           V+T ++ I+   ++S K  VY ++    +  +F+LSF F CE F  S
Sbjct: 190 VNTDQDHIIDNQRVSLKGNVYFIAHDILKEEAFLLSFDFTCERFGPS 236


>At2g05410.1 68415.m00569 ubiquitin-specific protease-related /
           meprin and TRAF homology (MATH) domain-containing
           protein-related similar to ubiquitin-specific protease
           12 [Arabidopsis thaliana] GI:11993471; supported by
           tandem duplication of meprin and TRAF homology (MATH)
           domain protein  (GI:4914358) (TIGR_Ath1:At2g05420)
           [Arabidopsis thaliana]
          Length = 265

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 36  LDEVKEKVKTLEPIIIFLTDGDPTVGVTSTKTI-IKHLTEKNKGENKATMFCLGLGDDVN 212
           LDE+KEK K  E  ++ L + D  +     + + I+    K K E  A    L L DD++
Sbjct: 203 LDELKEKKKKEESCLVRLREMDEQLQPFKKRCLDIEDQISKEKEELLAAREPLSLYDDID 262

Query: 213 N 215
           N
Sbjct: 263 N 263


>At2g38770.1 68415.m04760 expressed protein
          Length = 1509

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +3

Query: 99  DP-TVGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRKLCLLNDGFSRRIYEA 275
           DP T       ++I  + EK + EN A   C    DD+  KFL+K+  L +G    I E 
Sbjct: 120 DPETATFEHVMSMILMINEKFR-ENVAAWICFHDRDDLFKKFLQKVLRLKEGRDLTIAEK 178

Query: 276 ADAALQLSDFYRQVSSPLLAHV 341
            +  + + + ++ +   ++  +
Sbjct: 179 TNYLVFMINAFQSLEDAVVNEI 200


>At2g32630.1 68415.m03983 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 624

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 137 NDSFSTRYTD---SWIAVCQEYDNRFQGFDFFFNLIQRFFLGSGFF 9
           ND F  R  +   S +  C   + +F+ F+ FF+L+ R ++ +G F
Sbjct: 125 NDGFYKRPVEELGSAMVDCDISEEKFEFFEKFFDLVFRVYVDNGMF 170


>At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA
           helicase, putative nearly identical to HUA enhancer 2
           [Arabidopsis thaliana] GI:16024936
          Length = 995

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 320 GHLSVK-VTQLKRRVSCLVDTSRETIV 243
           GH+    V Q+K R +CL+DT  E +V
Sbjct: 814 GHIDADGVVQVKGRAACLIDTGDELLV 840


>At1g49360.1 68414.m05533 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 481

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 36  LDEVKEKVKTLEPIIIFLTDGD--PTVGVTSTKTIIKHLTEKNKGENKAT 179
           L+ V EK +TL+   IFL+DG    T G+T + + I +   +   E ++T
Sbjct: 362 LESVWEKKETLDGSSIFLSDGSCVMTYGLTGSMSNILYFWSRFINERRST 411


>At1g57990.1 68414.m06572 purine permease-related low similarity to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 390

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +3

Query: 231 LCLLNDGFSRRIYEAADAALQ-----LSDFYRQVSSPLLAHVNFVYPSDQVNEETTTKHK 395
           + LLN  + +   E +D  LQ     L    +  + PLL  + F++PS + N+ETT   +
Sbjct: 56  MLLLNFFYVQDNREDSDQDLQYRGTWLQALVQNAAFPLLIPLFFIFPSPKQNQETTNT-R 114

Query: 396 FRTF 407
           F +F
Sbjct: 115 FLSF 118


>At3g13790.1 68416.m01742 beta-fructosidase (BFRUCT1) /
           beta-fructofuranosidase / cell wall invertase identical
           to beta-fructofuranosidase GI:402740 from [Arabidopsis
           thaliana]
          Length = 584

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +3

Query: 72  PIIIFLTDGDPTVGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRKLCLLNDG 251
           P+  F ++G  T        I+KH+ + +  + K   + +G  D V +KF+       DG
Sbjct: 252 PVTRFGSNGVETSSFGEPNEILKHVLKISLDDTKHDYYTIGTYDRVKDKFVPDNGFKMDG 311

Query: 252 FSRR 263
            + R
Sbjct: 312 TAPR 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,814,803
Number of Sequences: 28952
Number of extensions: 188470
Number of successful extensions: 470
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)