Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K17
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42216| Best HMM Match : No HMM Matches (HMM E-Value=.)             225   1e-59
SB_31464| Best HMM Match : Lyase_1 (HMM E-Value=2.2e-32)              179   1e-45
SB_56508| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_49534| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_46243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_38362| Best HMM Match : BRCT (HMM E-Value=0)                        29   2.3  
SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)                   28   3.1  
SB_47044| Best HMM Match : UPF0153 (HMM E-Value=2.9e-07)               28   4.1  
SB_40170| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_48907| Best HMM Match : Transket_pyr (HMM E-Value=0)                27   7.2  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_52928| Best HMM Match : PKD (HMM E-Value=0)                         27   9.5  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_13780| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_4836| Best HMM Match : 7tm_1 (HMM E-Value=1e-37)                    27   9.5  

>SB_42216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score =  225 bits (551), Expect = 1e-59
 Identities = 105/149 (70%), Positives = 118/149 (79%)
 Frame = +2

Query: 2   PFESAPNKFEALACHDAMVEVSGALNTIAVSLMKIGNDIRLLASGPRCGLAELMLPENEP 181
           PF S PNKFE LA HDAMVE+ GALN IA SLMKI ND+R L SGPRCGL EL LPENEP
Sbjct: 461 PFTSNPNKFEGLAAHDAMVELHGALNVIACSLMKIANDVRFLGSGPRCGLGELQLPENEP 520

Query: 182 GSSIMPGKVNPTQCEALTMIAVQVMGNHVGCTIGGSNGHFELNVFKPMMVANVLRSIRLI 361
           GSSIMPGKVNPTQCEA+TM+A QV+GN    ++GGSNGHFELNVFKPM+V NVL+S RLI
Sbjct: 521 GSSIMPGKVNPTQCEAITMVAAQVIGNQTAVSVGGSNGHFELNVFKPMIVRNVLQSTRLI 580

Query: 362 GDRSSAFNKNCAVGIKANEAQIAKIMRES 448
           GD   AF  NC  GI AN  +I+ ++ ES
Sbjct: 581 GDACVAFTDNCVNGIIANRDRISALLHES 609


>SB_31464| Best HMM Match : Lyase_1 (HMM E-Value=2.2e-32)
          Length = 306

 Score =  179 bits (435), Expect = 1e-45
 Identities = 80/141 (56%), Positives = 108/141 (76%)
 Frame = +2

Query: 11  SAPNKFEALACHDAMVEVSGALNTIAVSLMKIGNDIRLLASGPRCGLAELMLPENEPGSS 190
           SAPNKF AL+ H+ +V +SGAL T+AV+LMK+ ND+RLL SGPR GLAE+ LP NEPGSS
Sbjct: 113 SAPNKFAALSGHEPLVALSGALKTLAVALMKLANDLRLLGSGPRAGLAEVRLPANEPGSS 172

Query: 191 IMPGKVNPTQCEALTMIAVQVMGNHVGCTIGGSNGHFELNVFKPMMVANVLRSIRLIGDR 370
           IMPGKVNPTQCEAL+M+A QV+GN        S GH +LNVFKP+++ N+L+S+RL+ D 
Sbjct: 173 IMPGKVNPTQCEALSMLACQVLGNDTTIAFAASQGHLQLNVFKPVIIHNLLQSVRLLADG 232

Query: 371 SSAFNKNCAVGIKANEAQIAK 433
              F ++C  G++ +  ++A+
Sbjct: 233 CHNFQQHCVAGLQPDATKMAE 253


>SB_56508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 342 STLATIIGLKTFSSK-CPLLPPIVQPTWLPITWTAIMVRASH 220
           ST A ++GL+      CPLL  IV+P ++   W   +V  +H
Sbjct: 298 STQAAVVGLEPADVPLCPLLEHIVRPLFISPGWDLPIVATTH 339


>SB_49534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +2

Query: 77  NTIAVSLMKIGNDIRLLASGPRCGLAELMLPENEPGSSIMPGKVNPTQCEALTMIAVQV 253
           +T+AV L +IG+D + +  GP   L +  L      S ++PG+++  + + L   A+ V
Sbjct: 45  DTVAVGLARIGSDTQQIICGPMKSLVDYDL-GGPLHSLVIPGEMHFLEKDMLKEFAIDV 102


>SB_46243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -3

Query: 414 FALIPTAQFLLNADDRSPMSLMERSTLATIIGLKTFSSKCPLLPPIVQ-PTWLPITWTAI 238
           FA++  A F+     +S  S +   T      +     KCP+LPP+V  P  LP      
Sbjct: 87  FAVVMLALFIWQLSKQSAKSPVSERTQGNDDSVWPAIKKCPILPPLVSLPRDLPKDLNQS 146

Query: 237 MVR 229
           +VR
Sbjct: 147 LVR 149


>SB_38362| Best HMM Match : BRCT (HMM E-Value=0)
          Length = 1572

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 336 LATIIGLKTFSSKCPLLPPIVQPTWLPITWTAIMVRASHCVG 211
           +A  +G K +S  C L  P++ P W+   W     ++SH VG
Sbjct: 144 IAGEVGSKKYSVACSLNKPVMLPEWVFTLWED--GKSSHVVG 183


>SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
          Length = 1198

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = -2

Query: 322 RFEDVQLEVPVAPPYSAADVVAHHLDRDHGQGLALRRIHFTWHDRGS-GFVLGQHQLGET 146
           R E+++ E+     Y A  VV H+      +      +   W +RGS     G    G  
Sbjct: 711 RLEEIRSELK---RYDALKVVMHYNGWPETKQKLYGPVKKYWGERGSLSTHEGLLMRGRR 767

Query: 145 AARPGGQQPDVVADLHEGH 89
              P   +PD++  LH+GH
Sbjct: 768 LVIPSSLRPDILRYLHDGH 786


>SB_47044| Best HMM Match : UPF0153 (HMM E-Value=2.9e-07)
          Length = 237

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -3

Query: 285 PPIVQPTWLPITWTAIMVRASHCVGFTLPGMIEDPGSFSGSISSARPQRGPEASSRMSLP 106
           P  + P WL   W  +    +HC+ +T        GS  G+IS+     G    + + LP
Sbjct: 64  PRTLIPLWLASLWLLLATTLNHCLAWTAQPWWR--GSLLGAISAPLSYYGGAQIAGVGLP 121


>SB_40170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 205 SESDAVRGPDHDRGPSDGQPRRLH-YRGEQRALRAERLQTDDGR 333
           +E +  R  D D    DG+P R H   G ++  + +    DDGR
Sbjct: 143 NELERARDSDRDWQRGDGRPHREHRQEGREQESKRDSQNGDDGR 186


>SB_48907| Best HMM Match : Transket_pyr (HMM E-Value=0)
          Length = 548

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 227 ALTMIAVQVMGNHVGCTIG 283
           A++   + +MG+HVGC+IG
Sbjct: 332 AVSDSTINIMGSHVGCSIG 350


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 213 GFTLPGMIEDPGSF 172
           GF LPG+ +DPG+F
Sbjct: 10  GFALPGLAKDPGAF 23


>SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 264 WLPITWTAIMVRASHCVGFTLPGMIEDPGSFSGSISSARPQRGPEASSRMSLPI 103
           W+    +++  R    VG  L G+I  PG  SG    + P +G   S  + LP+
Sbjct: 30  WVDFGDSSVSSRVRGSVGVLL-GIISGPGIVSGPGIISGPVQGMRTSCHVELPV 82


>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2492

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 214  DAVRGPDHDRGPSDGQPRRLHYRGEQR 294
            DA RGP   RGPSD  PR+L     +R
Sbjct: 1079 DAHRGPSDPRGPSD--PRKLSNGAAER 1103


>SB_52928| Best HMM Match : PKD (HMM E-Value=0)
          Length = 1624

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 308 NVFKPMMVANVLRSIRLIGDRSSAFNKNCAVGIKANEA 421
           +V KP M++  +  ++ I D   + N N A+G  A  A
Sbjct: 487 SVSKPQMISLTIAMVQEISDLKLSINPNVAIGFPAMAA 524


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 205  SESDAVRGPDHDRGPSDGQPRRLHYRGEQRALRAERLQTDDGRQRAALHQA 357
            SE +       D    +G+ R L  + EQR   A+RL  +  RQR A+ +A
Sbjct: 2515 SEEETSMTETSDYSDVEGRVRLLKEQLEQRKREAQRLYHERKRQRRAMLRA 2565


>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 309 FSSKCPLLPPIVQPTWLPIT 250
           + +  P+ PPI+ PT LPIT
Sbjct: 161 YPTALPINPPIIYPTALPIT 180


>SB_13780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 363 PMSLMERSTLATIIGLKTFSSKCPLLPPIVQPTWLPITWTAIM 235
           P   +E    +++I      +K   L  + + T LP+TWTA +
Sbjct: 86  PKGSIESGNTSSVIVYSGSDNKGQYLITVTEKTCLPLTWTAFV 128


>SB_4836| Best HMM Match : 7tm_1 (HMM E-Value=1e-37)
          Length = 338

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -3

Query: 246 TAIMVRASHCVGFTLPGMIEDPGSFSGSISSARPQRGPEASSRMSLPIFM 97
           T +M+ + + +   L   +ED  S S +  +A  +RG E   R+S  +F+
Sbjct: 170 TLVMLLSFYGLRRILKKQVEDLKSLSNATETAYTRRGVEREKRVSTTVFI 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,185,979
Number of Sequences: 59808
Number of extensions: 267306
Number of successful extensions: 901
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)