Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K16
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1728 + 39480252-39480450,39480552-39481224,39481554-394816... 29 1.0
07_01_0570 + 4228567-4228852,4229198-4229217 27 5.4
02_03_0118 - 15451031-15451123,15451744-15451831,15451914-154519... 27 5.4
01_06_0991 + 33634334-33634454,33634656-33634939,33636250-336367... 27 5.4
05_01_0414 + 3262886-3262957,3264517-3264597,3265115-3265214,326... 27 7.1
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557... 27 7.1
03_04_0222 + 18858255-18858437,18858586-18858772,18858820-18859097 27 7.1
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900... 26 9.4
07_01_0216 - 1615604-1615626,1615835-1617782 26 9.4
02_05_0435 - 28958422-28958665,28959328-28959462,28960056-289602... 26 9.4
01_05_0126 - 18391879-18391937,18392021-18392102,18392508-183926... 26 9.4
>01_06_1728 +
39480252-39480450,39480552-39481224,39481554-39481638,
39481731-39481820,39481953-39482026,39482421-39482505,
39482582-39482668,39482797-39482927,39483642-39483723,
39483810-39483857,39484793-39484912
Length = 557
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 80 FHPPNVSYSASEDKYGSRFLSANPLGFPVD 169
+H P SYS S+DK G LS + F V+
Sbjct: 322 YHTPKSSYSYSDDKLGGNVLSVGDIPFFVN 351
>07_01_0570 + 4228567-4228852,4229198-4229217
Length = 101
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 68 YISEFHPPNVSYSASEDKYGSRFLSANPLGF 160
Y +H P + Y+ + YGS A+P GF
Sbjct: 68 YFGAYHEPTIGYAPHSEYYGSMVSHAHP-GF 97
>02_03_0118 -
15451031-15451123,15451744-15451831,15451914-15451985,
15452896-15453018,15453541-15453629
Length = 154
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = -1
Query: 343 NQYLGKHIYKHKGNH*NNIRLKVVRNYDLWSRFVMDHDIVEVDILNVVVCNLPQ 182
+ Y H++ G H + + +++V + + +H+I+ IL++ + LPQ
Sbjct: 99 SMYTWSHLFWCLGPHLSLVEVELVHKIEKLHKKFTNHEIINDQILHLDIHKLPQ 152
>01_06_0991 +
33634334-33634454,33634656-33634939,33636250-33636795,
33643361-33643966
Length = 518
Score = 27.1 bits (57), Expect = 5.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 71 YRPSIHTAYHQHDLSVIKDGAG 6
Y PS+ H+H+LS++ D +G
Sbjct: 457 YPPSLRHTGHRHELSIVSDKSG 478
>05_01_0414 +
3262886-3262957,3264517-3264597,3265115-3265214,
3265473-3265522,3265581-3265671,3266636-3266715,
3266940-3267005,3267761-3267860,3267934-3268011,
3268165-3268232,3268305-3268373,3268485-3268562,
3269561-3269631,3270632-3270709,3270808-3270913,
3271475-3271579,3272256-3272387,3272464-3272571,
3272655-3272764,3272868-3272963,3273155-3273617
Length = 733
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 236 IHHKPTPEIVVPYNF*TNIISMVSFMFIY 322
I+ K + VPYN N++S++ +F+Y
Sbjct: 79 IYRKQEGRVCVPYNEIYNLMSLMHLLFLY 107
>04_01_0422 +
5573833-5574647,5575577-5575692,5576922-5577130,
5579676-5579795,5581616-5581744,5581828-5581953,
5582945-5583000,5583084-5583183,5585155-5585272,
5585374-5585583,5585902-5586226,5587094-5587187,
5588021-5588129,5588246-5588514,5589153-5589280,
5589983-5590217,5590858-5591046,5591326-5591609,
5591698-5591890,5592040-5592207,5592429-5592514,
5594391-5594550
Length = 1412
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 175 TTPVADYKQQHSKYQLPRCHDP 240
T P YK SKY++P C+ P
Sbjct: 846 TEPSCPYKCISSKYKMPNCYTP 867
>03_04_0222 + 18858255-18858437,18858586-18858772,18858820-18859097
Length = 215
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 181 PVADYKQQHSKYQLPRCHDPSQTYSRDRSSLQL 279
PV +Y + + L RC P Q +SR +SL +
Sbjct: 31 PVENYTMEGGIHPLLRCPAPQQIWSRPANSLPI 63
>10_05_0085 -
9005539-9005922,9006207-9006463,9006707-9006883,
9007349-9007490,9007814-9007904,9009024-9010942
Length = 989
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 328 KHIYKHKGNH*NNIRLK 278
K IYKH+ + NNIR+K
Sbjct: 622 KRIYKHQNRNNNNIRIK 638
>07_01_0216 - 1615604-1615626,1615835-1617782
Length = 656
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 250 YSRDRSSLQLLNEYYFNGFLYVYIY 324
YSR + L L+ EY NG L Y+Y
Sbjct: 413 YSRRKGELILVYEYMSNGSLEKYLY 437
>02_05_0435 - 28958422-28958665,28959328-28959462,28960056-28960211,
28960287-28961092,28961177-28961254,28961809-28961883,
28962127-28962215,28962735-28962843,28963007-28963086,
28963739-28963794,28963876-28963958,28964049-28964118,
28964200-28964309,28964395-28964548,28965183-28965382,
28966175-28966348,28969080-28969277,28970564-28970791
Length = 1014
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 12 TIFYYRKVVLVVCRMY*WSIFLNSIHRTFPTVQAKTSMVLDSYLPILLA 158
++FY R+ + +CR W FL I R + A + +S+L L A
Sbjct: 939 SLFYSRRTAVFLCRKGFWKDFLVWIWRNAIQLVALVVCICNSWLHCLRA 987
>01_05_0126 -
18391879-18391937,18392021-18392102,18392508-18392667,
18392739-18392807,18392850-18392992,18393069-18393203,
18393283-18393341,18394090-18394187,18394347-18394510,
18394586-18394647,18394803-18394977,18396331-18396588,
18396694-18396841,18398458-18398813
Length = 655
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 77 EFHPPNVSYSASEDKYGSRFLSANPLGFP 163
EFH + ++ EDK+ SRF+S + + P
Sbjct: 485 EFHHVHSERTSKEDKHSSRFISEDLVHVP 513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,306,610
Number of Sequences: 37544
Number of extensions: 240562
Number of successful extensions: 508
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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