Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K16
         (394 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               28   3.1  
SB_4943| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.1  
SB_58034| Best HMM Match : VWA (HMM E-Value=0)                         27   4.1  
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)                      27   7.2  
SB_24935| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)                    27   7.2  
SB_32740| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  

>SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 418

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 229 CHDPSQTYSRDRSSLQLLNEYYFNGFLYVYIYVYLNI 339
           CH  +    R  S L++    Y   ++YVY+YVY+ +
Sbjct: 249 CHRNAYASRRPFSMLRVYVYVYVYVYVYVYVYVYVYV 285


>SB_4943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 89 VDGIQKYRPSIHTAYHQHDLS 27
          VDGI K  P    A+H HD+S
Sbjct: 25 VDGIDKLDPQRRVAFHIHDIS 45


>SB_58034| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1203

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 17   LLLPKGRVGGMPYVLMVYISEFHPPNVSY 103
            ++ PK R+GG+P   +V+I +F   NV+Y
Sbjct: 936  VVAPKERLGGLPLSTLVFIGKF-GKNVNY 963


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 83   HPPNVSYSASEDKYGSRFLSANPLGF-PVDRPLHL 184
            H  N  YS+    YGS  L  N LG  P +R  H+
Sbjct: 2175 HSSNTIYSSCATYYGSIMLPGNQLGLDPKERVAHI 2209


>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
          Length = 1710

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +1

Query: 238 PSQTYSRDRSSLQLLNEYYFNGFLYVYIYVYLN 336
           P+ T + + SS+ + N  Y + ++Y+  Y+Y++
Sbjct: 296 PNPTRATNLSSIYIDNYIYIDNYIYIDNYIYID 328


>SB_24935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 196 KQQHSKYQL-PRCHDPSQTYSRDRSS 270
           KQQ +K    PR   PSQ+YS D SS
Sbjct: 153 KQQDAKQSTSPRSTSPSQSYSDDNSS 178


>SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)
          Length = 406

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +2

Query: 8   PHHLLLPKGRVGGMPYVLMVYISEFHPPNVSYSASEDKYGSRFLSANPLGFPVDRP 175
           P++  +P   V        +Y S   PP   YSA    Y S + ++ P  +P   P
Sbjct: 29  PYNYHIPLPPVTKQTQARSMYSSYAAPPPYQYSAYLASYPSSYPASYPASYPASYP 84


>SB_32740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 241 SQTYSRDRS-SLQLLNEYYFNGFLYVYIYVYLNID 342
           ++TYS+ R  ++ LLN   F+  LY     YLN+D
Sbjct: 134 AETYSKRRFYNVNLLNLQEFSKLLYSRSVAYLNVD 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,144,004
Number of Sequences: 59808
Number of extensions: 289146
Number of successful extensions: 864
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)