Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K15
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    29   0.29 
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   0.88 
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    27   1.2  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    27   2.0  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   4.7  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   4.7  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    25   6.2  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   6.2  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    25   8.2  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   8.2  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    25   8.2  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.2  

>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = +2

Query: 71  LDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEI 250
           L IF+K  +++ ++  FES  K+  FH ++        W++  D   EEV  D+QR   +
Sbjct: 247 LQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDF--EEVEGDFQRICHL 304

Query: 251 VARHVLGAA 277
             R ++  A
Sbjct: 305 YERCLITCA 313


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 65  RFLDIFEKTFVQSLQKGKFESYG-KKID-FHDEKA 163
           +FL+I+ +T +  L  G  E  G KK++ +HD KA
Sbjct: 606 QFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKA 640


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = +3

Query: 84  KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL-- 257
           K+L +    K  +   + +  +T+ R+  L +T  +   +C K+  + I  DL+  SL  
Sbjct: 198 KQLDHFFSYKVTTVHKSYQRFATLLRRHLLDKTAKRYHDLCEKRPYKYITTDLLSPSLTC 257

Query: 258 -AMCSVQHLNHSTSTPSCPVRLTFT 329
            A   +Q +   TS+ S PV L  T
Sbjct: 258 FASDILQTVPEYTSSQSSPVLLPAT 282


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 418 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 281
           I  Q  L+ +  TH NPV    EC +S+C L   K  G E  L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 242 YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 346
           Y  +ARH L    + FD HTF  +   FY T  RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 17/78 (21%), Positives = 28/78 (35%)
 Frame = +3

Query: 108  RKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNH 287
            RK       R+ ++ +   + L     +   IC     Q  I     L  + C    L H
Sbjct: 1063 RKIAHFESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKH 1122

Query: 288  STSTPSCPVRLTFTKPHF 341
            S+S P C  +L     ++
Sbjct: 1123 SSSCPMCKTKLNKNNAYY 1140


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 83  EKTFVQSLQKGKFESYGKKIDFHDEKAIN 169
           EKT V+S+ K +  + G   DFH E A N
Sbjct: 12  EKTHVESIVKFEDSNRGTITDFHIETANN 40


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +3

Query: 276 HLNHSTSTPSCPVRLTF--TKPHFETLHSISYITGLWVTLT 392
           HL  S STPS    LTF  T  +  T H       LW  L+
Sbjct: 605 HLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLS 645


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 155 EKAINFVGNYWQENADLYEEEVTKDYQRSYEIVARHVLG 271
           +K +N   N W     L+E+E+  + +  +++ AR V G
Sbjct: 131 QKILNAGQNLWFNEIILFEDELADNGKSMFDVRARVVQG 169


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +2

Query: 263 VLGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYNR 373
           V G  P PF   T   S+   Y   LRD    QL N+
Sbjct: 180 VNGDVPSPFGASTASSSSRRVYSVDLRDSGDVQLPNQ 216


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +2

Query: 32  NLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYE 211
           NL+S + Y  +  +   +++   S   GK+  Y ++ +  D  + N  G Y + N   Y 
Sbjct: 161 NLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNNKDGGYRRNN---YR 217

Query: 212 EEVTKDYQRSY 244
           +  +  Y+ SY
Sbjct: 218 DRDSNRYRNSY 228


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 162 QLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTP-SCPVRL 320
           +L  S TI    P+C++ K +  +N    L+L+   +  L   TS P  CP++L
Sbjct: 228 ELNASVTISG-IPVCIRSKEKMFLNPDCALTLSFICI-FLAQYTSIPLPCPLQL 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,615
Number of Sequences: 5004
Number of extensions: 42999
Number of successful extensions: 145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)