Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K15
(492 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 29 2.1
SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68) 29 2.8
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 28 4.8
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41) 27 6.4
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 27 8.4
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 27 8.4
SB_2823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 31.1 bits (67), Expect = 0.52
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 255 LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 347
L+ CS+Q L +T T P+R++F++PH T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450
>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -2
Query: 161 PFHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSLRCVDC 30
P H NQ C IC+ G KS KCP L S RC C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Frame = +2
Query: 104 LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 235
L+KGKF+ S K ID E+ F+G+ W ++ DL +++E K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143
>SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68)
Length = 306
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 266 LGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYNRIVGYINAF 397
+G + + F+P+ L F T+ D FY NR +G IN++
Sbjct: 1 MGVTLRRAKEKRFIPADLSFGITSFYDVYFYSPRNRSLGIINSY 44
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 14 QRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 154
Q+P+N++LH +A+ T L GKF+S G+ D H+
Sbjct: 4733 QKPNNHHLHRTCKADALEV----NVTLRGGLHAGKFKSVGRTRDVHE 4775
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 27.9 bits (59), Expect = 4.8
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 240 LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*S 413
L L+L ++ HL +ST T S LT T T ++++ T TLTHS++T S
Sbjct: 52 LTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTL-TYSTLTHSTLTHSTLTHSTLTHS 110
Query: 414 LILKRNFISSAL 449
+ S L
Sbjct: 111 TLTHSTITHSTL 122
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +3
Query: 243 MKLSLAMCSVQHLNHSTSTPSCPVRLTFTKP---HFETLH-SISYITGLWVTLTHSSIT* 410
+ L+ + + L H T T S LT T H H +++++T + TLTHS++T
Sbjct: 40 LNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTH 99
Query: 411 SLILKRNFISSAL 449
S + S L
Sbjct: 100 STLTHSTLTHSTL 112
>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
Length = 1069
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 119 FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 259
FE Y ++ DEKA ++ Y ++ A + E +RSY + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 84 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAM 263
K + YS K ++ AR S ++ + + + KR KKK++R N MKL+ +
Sbjct: 893 KFVDYSEKAKLRASAQARNSRSPVEVAIEEEKRVAKRKKEQRKKKVRRRKNAAMKLANKL 952
Query: 264 CS 269
S
Sbjct: 953 VS 954
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 101 SLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQR 238
+LQ+G S K+++ A+ G+ Q++ ++ E E +DYQR
Sbjct: 499 NLQRGYIASNQDKLEWKVFFAMGKTGDNSQDSRNIREAEEQRDYQR 544
>SB_2823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 567
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 16/71 (22%)
Frame = +2
Query: 305 MPSALDFYQTALRDPAFY----------QLYNRIVGYI---NAF--KHYLKPYPQEKLH- 436
+P+ LD+ TA+ D F Q++ R++ ++ +A+ HY++ PQ K+H
Sbjct: 450 LPTPLDYIPTAVLDGLFLFVAVTSLDDNQMFERLLLFVTEQSAYPPNHYIRRVPQRKMHA 509
Query: 437 FVGVKSMMLSL 469
+ G++ + L +
Sbjct: 510 YTGMQMLQLGI 520
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,195,382
Number of Sequences: 59808
Number of extensions: 314580
Number of successful extensions: 947
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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