Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K15
(492 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 30 0.74
At5g22540.1 68418.m02630 expressed protein contains Pfam profile... 29 1.3
At4g11310.1 68417.m01827 cysteine proteinase, putative contains ... 29 1.3
At2g45870.1 68415.m05705 expressed protein contains Pfam profile... 29 1.3
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro... 28 3.0
At1g42460.1 68414.m04896 Ulp1 protease family protein contains P... 28 3.0
At5g15510.1 68418.m01816 expressed protein 27 5.2
At1g17460.1 68414.m02141 myb family transcription factor contain... 27 6.9
At4g10670.1 68417.m01743 transcription elongation factor-related... 27 9.1
At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR) domai... 27 9.1
At3g01015.1 68416.m00001 expressed protein ; expression supporte... 27 9.1
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 30.3 bits (65), Expect = 0.74
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 132 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 275
AR++I T+KR + P+ + +++N L+KL A C Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766
>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 440
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 56 EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 175
EA LD+ KTFV + + + + K F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256
>At4g11310.1 68417.m01827 cysteine proteinase, putative contains
similarity to cysteine proteinase RD21A (thiol protease)
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 364
Score = 29.5 bits (63), Expect = 1.3
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Frame = +2
Query: 23 DNYNLHSVKNYEAIRFLDIFEKTFVQSLQK-GKFESYGKKIDFHDEKAINFVGNYWQENA 199
DN LHSV + EA IFE V+ + G +++ ++ + F+ N EN
Sbjct: 33 DNNRLHSVFDAEASL---IFESWMVKHGKVYGSVAEKERRLTIFEDN-LRFINNRNAENL 88
Query: 200 DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 346
Y +T S GA P+P H FM S+ D Y+T+ D
Sbjct: 89 S-YRLGLTGFADLSLHEYKEVCHGADPRPPRNHVFMTSS-DRYKTSADD 135
>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
PF05249: Uncharacterised protein family (UPF0187)
Length = 410
Score = 29.5 bits (63), Expect = 1.3
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +3
Query: 111 KANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHS 290
K++ + ++ KLIS +K S+ I +R + K+ L N + S S++HL H
Sbjct: 49 KSDDSPLSEKLISLLKAVPNWSDGIKERR-MQQKRSLYTHENWVRHRS----SLRHLRHV 103
Query: 291 TSTPSCPVRLTFTKPHF 341
+S+PS V L+ P F
Sbjct: 104 SSSPSSRVILSLIPPVF 120
>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
P450 76A2, eggplant, PIR:S38534
Length = 516
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +2
Query: 134 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 232
+K FH EKA G + +E ++ E +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278
>At1g42460.1 68414.m04896 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 762
Score = 28.3 bits (60), Expect = 3.0
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -2
Query: 488 KNVTNFSTTTSLI*RRRNEVSLEDKASGNA*MR*CNPQSCYIADRMQGLEVRFGKSQAHW 309
K TN + T L RR+N +E+K G+ + SC I D+++ + K HW
Sbjct: 214 KAPTNARSATGL--RRKNRSPIEEKGEGSGGID-IPAFSCMIDDKLKAQAEKIIKGMIHW 270
>At5g15510.1 68418.m01816 expressed protein
Length = 497
Score = 27.5 bits (58), Expect = 5.2
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +2
Query: 137 KIDFHDEKAINFVGNYWQENA---DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFM 307
+ D+ + ++F+ Y E L EEE + ++ E+V + A P P+ F+
Sbjct: 397 EFDYQVAEKMSFIEQYKMERERQQKLAEEEEIRRLRK--ELVPK----AQPMPYFDRPFI 450
Query: 308 PSALDFYQTALRDPAFY 358
P + TA RDP F+
Sbjct: 451 PRRSSKHPTAPRDPKFH 467
>At1g17460.1 68414.m02141 myb family transcription factor contains
Pfam PF00249: Myb-like DNA-binding domain
Length = 604
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 66 GSWTFLKRLSYSPY 107
G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530
>At4g10670.1 68417.m01743 transcription elongation factor-related
low similarity to chromatin-specific transcription
elongation factor FACT 140 kDa subunit [Homo sapiens]
GI:5499741
Length = 470
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/61 (22%), Positives = 33/61 (54%)
Frame = +3
Query: 78 FLKRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL 257
+LK +S+ +S+ + +++ S ++ + +RT + ++KLQ + N+ LSL
Sbjct: 61 YLKEVSFRTKDSRHSSDVVQQVKSLRRKVMARESERAERTSLVNQEKLQIVRNNSKPLSL 120
Query: 258 A 260
+
Sbjct: 121 S 121
>At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 239
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 105 YRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIIND-LMKLSL 257
++K NR ++ + + ++ T+G + IC + I ND L+KL+L
Sbjct: 155 FKKTCQNRTEDEINLRRRALIDVANTLGYHSTICKANMTKEITNDVLVKLNL 206
>At3g01015.1 68416.m00001 expressed protein ; expression supported
by MPSS
Length = 488
Score = 26.6 bits (56), Expect = 9.1
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 137 KIDFHDEKAINFVGNYWQENA---DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFM 307
+ D+ + IN V Y E L EEE + ++ E+V + A P P+ F+
Sbjct: 387 EFDYQVTEKINLVEQYKTERERQQKLAEEEEIRRLRK--ELVPK----AQPMPYFDRPFI 440
Query: 308 PSALDFYQTALRDPAF 355
P + + T RDP F
Sbjct: 441 PKRSNKHPTVPRDPKF 456
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,501,406
Number of Sequences: 28952
Number of extensions: 214698
Number of successful extensions: 612
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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