BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0005_K14 (368 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 32 0.15 U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 32 0.15 AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 30 0.59 U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical pr... 29 1.4 AF016673-5|AAB66123.1| 684|Caenorhabditis elegans Hypothetical ... 29 1.4 Z35663-8|CAA84728.1| 249|Caenorhabditis elegans Hypothetical pr... 27 3.2 AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical ... 27 4.2 AF039041-8|AAB94189.2| 448|Caenorhabditis elegans Hypothetical ... 26 7.3 Z81479-10|CAB03945.2| 324|Caenorhabditis elegans Hypothetical p... 26 9.7 U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 26 9.7 AY552606-1|AAS89253.1| 324|Caenorhabditis elegans heparan sulfa... 26 9.7 >U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein 1.0, isoform b protein. Length = 154 Score = 31.9 bits (69), Expect = 0.15 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Frame = +2 Query: 65 FKTKDVDAVFVE--RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEF 238 F+T++ +V+ + KKV S F + + D YY + + + V +TN V+E Sbjct: 37 FETEEEAQKYVDDRKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEH 88 Query: 239 LKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKD 352 +K Y P + ++S EEAIA FH +Y K+ Sbjct: 89 IKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118 >U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein 1.0, isoform a protein. Length = 155 Score = 31.9 bits (69), Expect = 0.15 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Frame = +2 Query: 65 FKTKDVDAVFVE--RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEF 238 F+T++ +V+ + KKV S F + + D YY + + + V +TN V+E Sbjct: 37 FETEEEAQKYVDDRKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEH 88 Query: 239 LKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKD 352 +K Y P + ++S EEAIA FH +Y K+ Sbjct: 89 IKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118 >AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1 mutant phenotypeprotein 1 protein. Length = 4177 Score = 29.9 bits (64), Expect = 0.59 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Frame = +2 Query: 119 SLFQDVDQVNVDDEYYKIGKDYDVEANIDXY----TNKKAVEEFLKLYR--IGYLPKY 274 S+ DV ++++DD+Y+ +G +D + D + AV F L+R +LP Y Sbjct: 2542 SMEDDVQRLDLDDDYFDMGGPFDAQRMDDMIFPPSFGRPAVTSFADLFRDDFDFLPPY 2599 >U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical protein ZC513.3 protein. Length = 619 Score = 28.7 bits (61), Expect = 1.4 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = -1 Query: 287 WRTHSTWEDN-RFCTISRILQQLSYWCSXRC 198 WRT + E + +F +SRIL+Q + W S C Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572 >AF016673-5|AAB66123.1| 684|Caenorhabditis elegans Hypothetical protein T06D4.4 protein. Length = 684 Score = 28.7 bits (61), Expect = 1.4 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Frame = +2 Query: 11 AGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLS---LFQDVDQVNVD 154 +GL+ +QS ++ + F K++DA+ + K+ L+ +F +D V D Sbjct: 297 SGLVRRIQSGILITNSSSFFGKNLDAIIQQTHKRTLANYLIFHFIDAVTFD 347 >Z35663-8|CAA84728.1| 249|Caenorhabditis elegans Hypothetical protein T04A8.9 protein. Length = 249 Score = 27.5 bits (58), Expect = 3.2 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +2 Query: 110 KVLSLFQDVDQVNVDDEYYKIGKDYDVEAN 199 KVL L Q Q ++ YYK+ K + + N Sbjct: 27 KVLGLAQSASQKDIKSAYYKLSKQHHPDTN 56 >AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical protein F40G9.12 protein. Length = 230 Score = 27.1 bits (57), Expect = 4.2 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +1 Query: 7 SSGAHCPRAIQCGVT 51 +SG HCPR + CG T Sbjct: 28 TSGDHCPRVLSCGHT 42 >AF039041-8|AAB94189.2| 448|Caenorhabditis elegans Hypothetical protein W03F8.2 protein. Length = 448 Score = 26.2 bits (55), Expect = 7.3 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +2 Query: 251 RIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKDFET 361 +I +P+ +FSI +KLRE +H F+ +D +T Sbjct: 158 KISIVPEKEDFSILEKKLRE--FNFYHGFFPREDLQT 192 >Z81479-10|CAB03945.2| 324|Caenorhabditis elegans Hypothetical protein C34F6.4 protein. Length = 324 Score = 25.8 bits (54), Expect = 9.7 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = +2 Query: 62 HFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKD-YDVEANIDXYTNKKAVEEF 238 HF + D + + KK + + DE YK+ ++ YD N+ KKA Sbjct: 244 HFDSLDANRAHLRYTKKKIPPNDQTLSMIRRDEVYKMEREFYDFINNLFDAVFKKATNGI 303 Query: 239 LKLYRIGYLPKYYEF 283 K + LP Y F Sbjct: 304 SKADDLVKLPLQYHF 318 >U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein F40H6.5 protein. Length = 1288 Score = 25.8 bits (54), Expect = 9.7 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%) Frame = +3 Query: 186 TLKPTSX---TTPIRKLLKNS*NCTESV 260 TL PT T PI K+LKNS N T+ V Sbjct: 139 TLSPTQYVFETNPIWKILKNSKNGTQGV 166 >AY552606-1|AAS89253.1| 324|Caenorhabditis elegans heparan sulfate 2O-sulfotransferase protein. Length = 324 Score = 25.8 bits (54), Expect = 9.7 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = +2 Query: 62 HFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKD-YDVEANIDXYTNKKAVEEF 238 HF + D + + KK + + DE YK+ ++ YD N+ KKA Sbjct: 244 HFDSLDANRAHLRYTKKKIPPNDQTLSMIRRDEVYKMEREFYDFINNLFDAVFKKATNGI 303 Query: 239 LKLYRIGYLPKYYEF 283 K + LP Y F Sbjct: 304 SKADDLVKLPLQYHF 318 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,783,151 Number of Sequences: 27780 Number of extensions: 142359 Number of successful extensions: 409 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 375 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 409 length of database: 12,740,198 effective HSP length: 73 effective length of database: 10,712,258 effective search space used: 524900642 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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