Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K13
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 115 6e-27
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 30 0.22
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 2.7
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 27 2.7
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 27 2.7
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 26 3.6
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 4.8
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 4.8
SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha... 25 6.3
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 6.3
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 25 6.3
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|... 25 8.4
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 25 8.4
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 8.4
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 115 bits (276), Expect = 6e-27
Identities = 59/127 (46%), Positives = 81/127 (63%), Gaps = 3/127 (2%)
Frame = +2
Query: 2 GMDVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRD 181
GMDV+A +A+KFA Y PLL+E TYRY GHSMSDPGT+YR+R+EVQ+VR RD
Sbjct: 273 GMDVLAVLQASKFAKKYTVENSQPLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVRAARD 332
Query: 182 PITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADP-EIPIEE-LSGDIYYSNL 355
PI K+ ++ + ++LK I+ ++R DE + A+ P PIEE L D+Y +
Sbjct: 333 PIEGLKKHIMEWGVANANELKNIEKRIRGMVDEEVRIAEESPFPDPIEESLFSDVYVAGT 392
Query: 356 EP-FIRG 373
EP + RG
Sbjct: 393 EPAYARG 399
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 30.3 bits (65), Expect = 0.22
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 143 CGTTFPGRTSNAQSIGTFPSQSE 75
C TFPG TS+ SI FPS ++
Sbjct: 182 CCATFPGNTSDINSISFFPSNAD 204
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 331 RGHILLEPGTFHPRHPPRGAVAAHP 405
RG I + P TF PP G++ A P
Sbjct: 275 RGSIPVNPSTFSASSPPSGSMLASP 299
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 234 SGVTSWLLMTFSLKEVIGSLVWRTSWTSSLVRY--DVPGSDIECPEYR 97
S + +WL FSLKE + W +S+ +Y D+P + + P+ R
Sbjct: 765 SMMKTWLCAKFSLKETNKTSFWHSSYNLFNRQYHVDMPDNVSDLPQTR 812
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 245 EIDAKVRKETDEASKQAKADPEIPIEE 325
EID+ ++ E ++ ++ K PEIP+++
Sbjct: 189 EIDSDIKDEKQKSLEEQKIAPEIPVKQ 215
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 585 ELPEFTKFLKKSLTTPEILANQRPLLTP*LVFNVTLERPQRID 457
E PEF+K LKK L E+ ++ L P V +V + +ID
Sbjct: 84 EYPEFSKTLKKHLEAYELALKEKRLKLP-NVSDVDNRKKAKID 125
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 191 SFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKA 301
S +EK + + PD+ K + V K++ E SKQ A
Sbjct: 43 SNEEKEVKETDIVPDENKVNELDVHKQSTEFSKQESA 79
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +1
Query: 109 AFDVRPGNVVPHEGRGPGGA----PDQGPDHLLQGEGHQQPTRHSRSVKGNRRESTQGNR 276
A++ RP ++ + PG A P + H+L + ++ S S RR S NR
Sbjct: 207 AYEERPPSLPRRKPSRPGTAITLPPYESDPHMLNEKDFERLRLESSSSPMMRRSSLNSNR 266
Query: 277 RGFET 291
R E+
Sbjct: 267 RSVES 271
>SPCC1020.07 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 204 FSLKEVIGSLVWRTSWTSSLVRYDVPGSDIECPEY 100
FS+ EV ++ RTS +S + D G D+ C EY
Sbjct: 37 FSM-EVKAKMMGRTSKEASRIFLDWSGIDLTCEEY 70
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +2
Query: 209 INNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGD 337
+NNQ + + + +AK ++ +E +KQ + + + ELS +
Sbjct: 178 LNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDE 220
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 337 VPGELLYWDLRVGLSLFRSLVGFLA 263
V G + WDLR+GL + RS +G A
Sbjct: 514 VDGLIRIWDLRIGLPV-RSFIGHTA 537
>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 85 DGNVPILWAFDVRPGNVV 138
+G +PI W V P NVV
Sbjct: 258 EGEIPIFWGCGVTPQNVV 275
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 387 RSCSTSRSLHANRPFRNLKKKNINQFS 467
+ S + H NRPFR+L+ + N F+
Sbjct: 57 KGLSVVNANHENRPFRDLEGYHFNTFT 83
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 357 NLSSAAPTP-GRSCSTSRSLHANRPFRNLKKKNINQFSGVVQVL 485
NL+ P P R + S SL + ++ N+N+F G++ ++
Sbjct: 146 NLTDRKPIPTSRKSNKSDSLASALSQLDINPSNVNKFDGLINIV 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,588
Number of Sequences: 5004
Number of extensions: 49963
Number of successful extensions: 187
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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