Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K13
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)                      150   7e-37
SB_4364| Best HMM Match : E1_dh (HMM E-Value=3.1e-13)                  48   6e-06
SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)                    33   0.23 
SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)                    32   0.31 
SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40)                 31   0.71 
SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)                   30   1.2  
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_58682| Best HMM Match : RyR (HMM E-Value=5.1)                       29   3.8  
SB_38207| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)                   28   6.6  
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)         28   6.6  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            27   8.7  
SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)                 27   8.7  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_811| Best HMM Match : DUF1011 (HMM E-Value=3.6e-25)                 27   8.7  

>SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)
          Length = 352

 Score =  150 bits (364), Expect = 7e-37
 Identities = 65/114 (57%), Positives = 91/114 (79%)
 Frame = +2

Query: 2   GMDVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRD 181
           GMDV+  REATK+A+DY  SGKGP+L+E++TYRY GHSMSDPGTSYR+RDE+Q VR+TRD
Sbjct: 217 GMDVLTVREATKWAVDYARSGKGPILMELKTYRYYGHSMSDPGTSYRSRDEIQSVRKTRD 276

Query: 182 PITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGDIY 343
           PIT  +EK++++ L + D +K+I+ + + E DEA + AK DPE P+++L   +Y
Sbjct: 277 PITGLREKLLDSGLASTDDIKKIEQEAKAEIDEAVECAKNDPEPPLDDLFMHVY 330


>SB_4364| Best HMM Match : E1_dh (HMM E-Value=3.1e-13)
          Length = 238

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +2

Query: 2   GMDVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRD 181
           G D +A   AT+ A  Y    K P  +E  TYR   HS SD    YR+ DE +  ++  D
Sbjct: 91  GNDAVACLHATQQARKYIVEQKKPYFLEFMTYRLGDHSTSDNSALYRSEDERKFWKEKND 150

Query: 182 PI---TSFKEK 205
           PI   TSF  K
Sbjct: 151 PIKRLTSFLTK 161


>SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)
          Length = 752

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
 Frame = +2

Query: 29  ATKFAID--YCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKE 202
           A  +++D  Y  +    L  E+E Y       + P       DE  E   T DP+    E
Sbjct: 175 AYSYSLDKRYMETSLDELAFEIEAYEAESRGETKPSDVIDETDEAAERLVTMDPVFETTE 234

Query: 203 KVINNQLVTPDQLKEIDAKVRKE--TDEASKQAKADPEIPIEELS 331
            V   Q  TPD       K++KE  ++E S +AK +     EE++
Sbjct: 235 VVEEAQEPTPD-----PEKLQKELCSEEKSDEAKLETVNKTEEVN 274


>SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)
          Length = 1021

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 28/98 (28%), Positives = 44/98 (44%)
 Frame = +2

Query: 68   GPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKVINNQLVTPDQLKE 247
            G L    ET R +   + D  T     D   E+ QT D I + K+K+  N++   D   E
Sbjct: 928  GSLYPRRETLRETRGDILDKTTQLVEMD--WELLQTYDEIKNLKQKIRRNEIDVFDLAHE 985

Query: 248  IDAKVRKETDEASKQAKADPEIPIEELSGDIYYSNLEP 361
            +D + R+E +   K+     E P+E     IY +  +P
Sbjct: 986  LD-EAREEYNRTEKRGL--DERPVEVPVWRIYVTGKQP 1020


>SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40)
          Length = 382

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/97 (20%), Positives = 45/97 (46%)
 Frame = +2

Query: 8   DVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPI 187
           D  A   A  FA+DY       + I++  YR  GH+  D    +      + + + ++  
Sbjct: 258 DAEAVVHAMLFALDYRMEFGSDVFIDLLGYRKYGHNEGDE-PKFTQPILYKTIAKHKNAR 316

Query: 188 TSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAK 298
             + EK+    ++  + +KE++ K + + DE  ++++
Sbjct: 317 DIYAEKLKAAGVIDANYVKELEEKYKSDLDENLEESR 353


>SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)
          Length = 696

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 118 VRPGNVVPHEGRGP--GGAPDQGPDHLLQGEGHQQPTR-HSRSVKGNRRESTQ 267
           +RP    PH+  G   GGAP+  P +     G+ +PT  + +  KG +   TQ
Sbjct: 179 LRPHKTKPHKAHGANSGGAPESSPHYRPTQTGYLKPTEINQQRKKGKKFVPTQ 231


>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1967

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
 Frame = +2

Query: 65   KGPLLIEMETYRYSGHSMSDPGTSYRTRDEV----QEVRQTRDPITSFKEKVINNQLVTP 232
            K   + ++E  +    +   PG   RTR+E+    +  R+  + +   KEK+ + +    
Sbjct: 1452 KNKKIDDLEVLKMKSSTPLTPGRDQRTREELRALRKRAREAENEVDDVKEKLRDAEKKLK 1511

Query: 233  DQLKEIDAKVRKETDEASKQAKADPEIPIEELSGDI 340
               K++  ++ +E +   K A A  ++ IEE  G I
Sbjct: 1512 SAQKDV-VEITEEKEGLQKMATAFEQL-IEEKEGYI 1545


>SB_58682| Best HMM Match : RyR (HMM E-Value=5.1)
          Length = 141

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +2

Query: 203 KVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELS 331
           K+ N +    + L+  D  + +ETD + +    D ++P+ E++
Sbjct: 99  KIYNREKCLQEALQSCDTALPEETDTSKRAHDVDDDVPVTEIN 141


>SB_38207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +1

Query: 133 VVPHEGRGPGGAPDQGPDHLLQGEGHQQPTRHSRSVKGNRRESTQGNRRG 282
           ++   G  PG APD  P      + H+  T H+R    +  +  + N  G
Sbjct: 88  ILSDAGTNPGYAPDSRPPPSEGAKRHEFATWHARGCSADLEKGVKSNEEG 137


>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
          Length = 634

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +1

Query: 85  DGNVPILWAFDVRPGNVVPHEGRGPGGAPDQGPDHLLQGEGH-QQPTRHSRSVKGNRRES 261
           DG VP LW F V    +  +   G G   D       QG G  ++P+R    V+   R  
Sbjct: 560 DGRVPDLWPFTVYNFRLAGYTTAGDGPKSDTITIR-TQGTGEKKEPSRSEGKVREKNRFR 618

Query: 262 TQGNRR 279
           ++G  R
Sbjct: 619 SEGKVR 624


>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
          Length = 636

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 97  PILWAFDVRPGNVVPHEGR-GPGGAPDQGPDHLLQGEGHQQPT--RHSRSVKGNRRESTQ 267
           P++    V+     P++ R G  G+P QGP  L++  G    T  +H R++     +S Q
Sbjct: 549 PLMKPSVVQQRPTFPNQSRMGQSGSPLQGPPPLIKPAGRPMQTQGKHHRNIPVIMNQSCQ 608

Query: 268 GN 273
            N
Sbjct: 609 PN 610


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 89   ETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKVINNQLVTPDQL 241
            E YR  G+  S PG+ Y         ++TR+P  + +E+ +  + + P +L
Sbjct: 1327 EYYRQMGYG-SAPGSQYSGEGSGHIEKETREPSPTTQEEPVEVEEIPPSRL 1376


>SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)
          Length = 508

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +1

Query: 106 WAFDVRPGNVV---PHEGRGPGGAPDQGPDHLLQGEGHQQPTRHSRSVKGNRRESTQGN 273
           W FDV   ++V   P++      A ++  +     EGH +P +H+  V   +    QGN
Sbjct: 248 WPFDVEAVSLVVKFPNDYPKVMRAEEEEKNKCPCSEGHAEPAQHTEHVNKPQHNPRQGN 306


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +2

Query: 161  EVRQTRDPITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGD 337
            E  Q    + + KEK +N  +   D  K    ++ KE++E  KQ   + E+ IEE  GD
Sbjct: 1479 EKEQLLSELKTQKEK-LNTVIEELDDTKST-LEIIKESNEKLKQRNKECELKIEESKGD 1535


>SB_811| Best HMM Match : DUF1011 (HMM E-Value=3.6e-25)
          Length = 419

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 577 RIYEIPQKVAHNPRDISKSKTPPDPLISV*CNT*TTPEN*FMFFFFKLRNGL 422
           R Y++     H  ++ISK++      I V  N  TT +N F+     + NGL
Sbjct: 221 REYDVTTSDMHELQEISKTEAQSTSDIQVTDNILTTRQNVFLLVILAIVNGL 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,764,200
Number of Sequences: 59808
Number of extensions: 403287
Number of successful extensions: 1368
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)