Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K13
(596 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47812-8|CAD59156.1| 414|Caenorhabditis elegans Hypothetical pr... 167 4e-42
Z47812-7|CAA87793.1| 397|Caenorhabditis elegans Hypothetical pr... 167 4e-42
AL021480-5|CAJ21557.1| 432|Caenorhabditis elegans Hypothetical ... 58 4e-09
AL021480-4|CAA16329.2| 431|Caenorhabditis elegans Hypothetical ... 58 4e-09
AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ... 35 0.038
U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical pr... 32 0.27
AL031621-3|CAA20935.2| 740|Caenorhabditis elegans Hypothetical ... 31 0.47
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 31 0.62
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 31 0.82
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 29 1.9
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 29 1.9
Z70311-12|CAA94381.3| 418|Caenorhabditis elegans Hypothetical p... 28 4.4
Z70306-7|CAA94327.3| 418|Caenorhabditis elegans Hypothetical pr... 28 4.4
U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily ass... 28 4.4
U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily ass... 28 4.4
U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical pr... 28 4.4
U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical pr... 28 4.4
U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF003740-9|AAC48140.1| 852|Caenorhabditis elegans Hypothetical ... 28 4.4
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 28 5.8
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 28 5.8
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 28 5.8
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 28 5.8
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 5.8
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 5.8
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 5.8
Z72502-2|CAA96588.1| 423|Caenorhabditis elegans Hypothetical pr... 27 7.7
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 27 7.7
U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like p... 27 7.7
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 27 7.7
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 27 7.7
AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like ... 27 7.7
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 27 7.7
AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like ... 27 7.7
>Z47812-8|CAD59156.1| 414|Caenorhabditis elegans Hypothetical
protein T05H10.6b protein.
Length = 414
Score = 167 bits (407), Expect = 4e-42
Identities = 77/124 (62%), Positives = 97/124 (78%)
Frame = +2
Query: 2 GMDVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRD 181
GMD++A REATK+A +YC SGKGPL++EM TYRY GHSMSDPGTSYRTR+E+QEVR+TRD
Sbjct: 267 GMDILAVREATKWAKEYCDSGKGPLMMEMATYRYHGHSMSDPGTSYRTREEIQEVRKTRD 326
Query: 182 PITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGDIYYSNLEP 361
PIT FK+++I + L T ++LK ID +VRKE DEA K A +D +P E L DIY++
Sbjct: 327 PITGFKDRIITSSLATEEELKAIDKEVRKEVDEALKIATSDGVLPPEALYADIYHNTPAQ 386
Query: 362 FIRG 373
IRG
Sbjct: 387 EIRG 390
>Z47812-7|CAA87793.1| 397|Caenorhabditis elegans Hypothetical
protein T05H10.6a protein.
Length = 397
Score = 167 bits (407), Expect = 4e-42
Identities = 77/124 (62%), Positives = 97/124 (78%)
Frame = +2
Query: 2 GMDVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRD 181
GMD++A REATK+A +YC SGKGPL++EM TYRY GHSMSDPGTSYRTR+E+QEVR+TRD
Sbjct: 250 GMDILAVREATKWAKEYCDSGKGPLMMEMATYRYHGHSMSDPGTSYRTREEIQEVRKTRD 309
Query: 182 PITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGDIYYSNLEP 361
PIT FK+++I + L T ++LK ID +VRKE DEA K A +D +P E L DIY++
Sbjct: 310 PITGFKDRIITSSLATEEELKAIDKEVRKEVDEALKIATSDGVLPPEALYADIYHNTPAQ 369
Query: 362 FIRG 373
IRG
Sbjct: 370 EIRG 373
>AL021480-5|CAJ21557.1| 432|Caenorhabditis elegans Hypothetical
protein Y39E4A.3b protein.
Length = 432
Score = 58.4 bits (135), Expect = 4e-09
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Frame = +2
Query: 2 GMDVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRD 181
G D++A ATK A + + P+LIE TYR HS SD T+YR+ DEVQ
Sbjct: 285 GNDLLAVYNATKEARRVALTNR-PVLIEAMTYRLGHHSTSDDSTAYRSSDEVQTWGDKDH 343
Query: 182 PITSFKEKVIN----NQLVTPDQLKEIDAKVRKETDEASKQAKA 301
PIT FK+ + N+ + KE+ +V E A K+ KA
Sbjct: 344 PITRFKKYITERGWWNEEKEMEWQKEVKKRVLTEFAAAEKRKKA 387
>AL021480-4|CAA16329.2| 431|Caenorhabditis elegans Hypothetical
protein Y39E4A.3a protein.
Length = 431
Score = 58.4 bits (135), Expect = 4e-09
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Frame = +2
Query: 2 GMDVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRD 181
G D++A ATK A + + P+LIE TYR HS SD T+YR+ DEVQ
Sbjct: 284 GNDLLAVYNATKEARRVALTNR-PVLIEAMTYRLGHHSTSDDSTAYRSSDEVQTWGDKDH 342
Query: 182 PITSFKEKVIN----NQLVTPDQLKEIDAKVRKETDEASKQAKA 301
PIT FK+ + N+ + KE+ +V E A K+ KA
Sbjct: 343 PITRFKKYITERGWWNEEKEMEWQKEVKKRVLTEFAAAEKRKKA 386
>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
protein T22B11.5 protein.
Length = 1029
Score = 35.1 bits (77), Expect = 0.038
Identities = 21/97 (21%), Positives = 44/97 (45%)
Frame = +2
Query: 8 DVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPI 187
D A A D+ + K +++++ YR GH+ D + Q ++QT+ +
Sbjct: 483 DPEAVMHVCNVAADWRKTFKKDVIVDLVCYRRHGHNELDE-PMFTQPLMYQRIKQTKTAL 541
Query: 188 TSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAK 298
++EK++N + +KE K ++A + A+
Sbjct: 542 EKYQEKILNEGVANEQYVKEELTKYGSILEDAYENAQ 578
>U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical
protein C27D6.1 protein.
Length = 782
Score = 32.3 bits (70), Expect = 0.27
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +2
Query: 110 HSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASK 289
H + +Y R+ E RQT+ + S + ++ N+ KEI+A+ K D A++
Sbjct: 211 HKVFQVAATYTIRENRSE-RQTKVKLESLERRLKANEKAR----KEIEAEAEKWKDRATR 265
Query: 290 QAKADPEIPIE 322
+K PE+ +E
Sbjct: 266 NSKRLPELELE 276
>AL031621-3|CAA20935.2| 740|Caenorhabditis elegans Hypothetical
protein F28H6.6 protein.
Length = 740
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +2
Query: 164 VRQTRDPITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGDIY 343
+RQTR+ + + ++ + + K A ++KE + +K AK E I EL +
Sbjct: 361 IRQTRETLDIELQIMLKDSINPKSHAKTFAALLKKERETRTKHAKVFMEAKINELDMGNF 420
Query: 344 YSNLEPF 364
Y + F
Sbjct: 421 YETYDSF 427
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 31.1 bits (67), Expect = 0.62
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 188 TSFKEKVINNQLVTPDQLKEIDAKV-RKETDEASKQAKADPEIPIEELSGDIYYSNLE 358
TS +V+N ++L+E +V K+ + +KQAK + E + + ++YY NL+
Sbjct: 261 TSDLNEVVNALYEGFEELQEEKLRVLSKQVERKTKQAKVEEERKLIDQQNEVYYKNLK 318
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 360 LSSAAPTPGRSCSTSRSLHANRPFRNLKKKNINQFSGVVQVL 485
+S A TP SCS+S + A+ + K KN+N+F +++ L
Sbjct: 8 MSYADLTPVTSCSSSSNSEADANNFSTKNKNVNEFQKLIEEL 49
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +2
Query: 158 QEVRQTRDPITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGD 337
+ +R++ +KEKV N L L IDA RK E +K EEL G
Sbjct: 505 ESLRKSEAVAEGYKEKVAANNLTLDKLLLHIDAS-RKRIAELELSSKESENRSSEELEGK 563
Query: 338 I 340
I
Sbjct: 564 I 564
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.5 bits (63), Expect = 1.9
Identities = 27/91 (29%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Frame = +1
Query: 142 HEGRGPGGAPDQGPD--HLLQGEGHQQPTRHSRSVKGNRRESTQGNRRGFETG*GRP*DP 315
H G G G+ P H G GH + RH + R + G R G G P P
Sbjct: 304 HGGHGGHGSRSGSPGGRHGHGGSGHHRGGRHGGHGRHGSRSGSPGGRHGHGGRHGPPHCP 363
Query: 316 NRGALRGHILLEP-GTFH-PRHPPRGAVAAH 402
R G P G H RH P H
Sbjct: 364 GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRH 394
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +1
Query: 142 HEGRGPGGAPDQGPDHLLQGEGHQQPTRHSRSVKGNRRESTQGNRRGFETG*GRP*DPNR 321
H RG G GP H GH P H R S G+ G RP P+
Sbjct: 374 HSPRGHGHGGRHGPPHCPGRHGHHGPPHHHH--HDGRSPSRHGHHHHHHHG-CRPFPPHH 430
Query: 322 G 324
G
Sbjct: 431 G 431
>Z70311-12|CAA94381.3| 418|Caenorhabditis elegans Hypothetical
protein T25B9.10 protein.
Length = 418
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 160 GGAPDQGPDHLLQGEGHQQPTRHSRSVKGNRRESTQGNRRGF 285
GG P G D + + HQ PTRH ++ + + +T N F
Sbjct: 10 GGDPKSG-DSSSEKQSHQTPTRHPPWLRSSSQPATWRNSASF 50
>Z70306-7|CAA94327.3| 418|Caenorhabditis elegans Hypothetical
protein T25B9.10 protein.
Length = 418
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 160 GGAPDQGPDHLLQGEGHQQPTRHSRSVKGNRRESTQGNRRGF 285
GG P G D + + HQ PTRH ++ + + +T N F
Sbjct: 10 GGDPKSG-DSSSEKQSHQTPTRHPPWLRSSSQPATWRNSASF 50
>U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform b protein.
Length = 408
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 161 EVRQTRDPITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQ 292
E+ + DPI KEKV+ N+ D + ++ ++RK ++E +Q
Sbjct: 241 ELEENSDPIEDEKEKVVTNR----DMINKVCWQLRKISEELPRQ 280
>U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform a protein.
Length = 406
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 161 EVRQTRDPITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQ 292
E+ + DPI KEKV+ N+ D + ++ ++RK ++E +Q
Sbjct: 241 ELEENSDPIEDEKEKVVTNR----DMINKVCWQLRKISEELPRQ 280
>U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical
protein T28D9.3a protein.
Length = 341
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 8 DVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHS 115
D T ++ ++ DY +G L++E YSGHS
Sbjct: 163 DTCVTGDSHRYITDYTCTGPPELVLEARKSFYSGHS 198
>U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical
protein T28D9.3c protein.
Length = 274
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 8 DVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHS 115
D T ++ ++ DY +G L++E YSGHS
Sbjct: 164 DTCVTGDSHRYITDYTCTGPPELVLEARKSFYSGHS 199
>U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical
protein T28D9.3b protein.
Length = 342
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 8 DVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHS 115
D T ++ ++ DY +G L++E YSGHS
Sbjct: 164 DTCVTGDSHRYITDYTCTGPPELVLEARKSFYSGHS 199
>AF003740-9|AAC48140.1| 852|Caenorhabditis elegans Hypothetical
protein C41D11.6 protein.
Length = 852
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 236 QLKEIDAKVRKETDEASKQAKADPEIPI--EELSGDIYYSNLEPFIRGTHP 382
++K + A + DEA + + + PI E+ ++ S P +RGTHP
Sbjct: 692 RVKVVRAMSARLRDEAKPEVLTEDDFPILWREVFTEVVQSVNRPNVRGTHP 742
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 170 QTRDPITSFKEKVINNQLVTPDQLKEIDAKV--RKETDEASKQAKADPEIPIEELSGDIY 343
QT + E + ++LV +E + K+ RKE + K+ KA+ + IEE+ I+
Sbjct: 217 QTHEMSKQLYETHVRDKLVARQNQEECERKISKRKEETDELKERKANGQKKIEEMRTSIH 276
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 170 QTRDPITSFKEKVINNQLVTPDQLKEIDAKV--RKETDEASKQAKADPEIPIEELSGDIY 343
QT + E + ++LV +E + K+ RKE + K+ KA+ + IEE+ I+
Sbjct: 203 QTHEMSKQLYETHVRDKLVARQNQEECERKISKRKEETDELKERKANGQKKIEEMRTSIH 262
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 170 QTRDPITSFKEKVINNQLVTPDQLKEIDAKV--RKETDEASKQAKADPEIPIEELSGDIY 343
QT + E + ++LV +E + K+ RKE + K+ KA+ + IEE+ I+
Sbjct: 203 QTHEMSKQLYETHVRDKLVARQNQEECERKISKRKEETDELKERKANGQKKIEEMRTSIH 262
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 254 AKVRKETDEASKQAKADPEIPIEEL 328
A V +ET+ ++ AKAD IP+E L
Sbjct: 4293 ASVERETNMEARVAKADQSIPVETL 4317
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 245 EIDAKVRKETDEASKQAKADPEIPIEELSGDIYYS-NLEPFIRGTHP 382
E+ A ++ K+AK DP P LS +YS + P I+ HP
Sbjct: 110 EVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHP 156
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 233 DQLK-EIDAKVRKETDEASKQAKAD 304
D+LK E DAK++KE D+ KQ K D
Sbjct: 7727 DKLKQEADAKLKKEKDDKLKQEKND 7751
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 146 RDEVQEVRQTRDPITSFKEKVINNQLVTPDQLK-EIDAKVRKETDEASKQAKADPEIPIE 322
+D+ +++Q D KEK + D+LK E DAK++KE D+ KQ +AD ++ E
Sbjct: 7723 KDKDDKLKQEADAKLK-KEKDDKLKQEKNDKLKQEADAKLKKEKDDKLKQ-EADAKLKKE 7780
Query: 323 E 325
+
Sbjct: 7781 K 7781
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 233 DQLK-EIDAKVRKETDEASKQAKAD 304
D+LK E DAK++KE D+ KQ K D
Sbjct: 7747 DKLKQEADAKLKKEKDDKLKQEKND 7771
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 146 RDEVQEVRQTRDPITSFKEKVINNQLVTPDQLK-EIDAKVRKETDEASKQAKADPEIPIE 322
+D+ +++Q D KEK + D+LK E DAK++KE D+ KQ +AD ++ E
Sbjct: 7743 KDKDDKLKQEADAKLK-KEKDDKLKQEKNDKLKQEADAKLKKEKDDKLKQ-EADAKLKKE 7800
Query: 323 E 325
+
Sbjct: 7801 K 7801
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 233 DQLK-EIDAKVRKETDEASKQAKAD 304
D+LK E DAK++KE D+ KQ K D
Sbjct: 7747 DKLKQEADAKLKKEKDDKLKQEKND 7771
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 146 RDEVQEVRQTRDPITSFKEKVINNQLVTPDQLK-EIDAKVRKETDEASKQAKADPEIPIE 322
+D+ +++Q D KEK + D+LK E DAK++KE D+ KQ +AD ++ E
Sbjct: 7743 KDKDDKLKQEADAKLK-KEKDDKLKQEKNDKLKQEADAKLKKEKDDKLKQ-EADAKLKKE 7800
Query: 323 E 325
+
Sbjct: 7801 K 7801
>Z72502-2|CAA96588.1| 423|Caenorhabditis elegans Hypothetical
protein C08B6.5 protein.
Length = 423
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 340 YVPGELLYWDLRVGLSLFRSLVGFLAYFRVDF 245
++P + WD R GL++ R G L+Y F
Sbjct: 280 FLPQAVSVWDKRQGLTVIRDTSGILSYVAFGF 311
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 310 DPNRGALRGHILLEPGTFHPRHPPRGAVAAHPGR 411
DPN + H ++ P HP +PP+ A PG+
Sbjct: 477 DPNYHYYQQHGMMPPHPGHPGYPPQHMNAFSPGQ 510
>U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like
protein protein 18 protein.
Length = 932
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 158 QEVRQTRDPITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGD 337
+ +R++ +KEKV N L L IDA RK E +K EEL
Sbjct: 575 ESLRKSEAVAEGYKEKVTANNLTLDKLLLHIDAS-RKRIAELELSSKESENRSSEELEEQ 633
Query: 338 -IYYSNL 355
+YY ++
Sbjct: 634 RLYYVSM 640
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 287 KQAKADPEIPIEELSGDIYYS-NLEPFIRGTHP 382
K+AK DP P LS +YS + P I+ HP
Sbjct: 125 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHP 157
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 287 KQAKADPEIPIEELSGDIYYS-NLEPFIRGTHP 382
K+AK DP P LS +YS + P I+ HP
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHP 158
>AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like
protein-18 protein.
Length = 932
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 158 QEVRQTRDPITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGD 337
+ +R++ +KEKV N L L IDA RK E +K EEL
Sbjct: 575 ESLRKSEAVAEGYKEKVTANNLTLDKLLLHIDAS-RKRIAELELSSKESENRSSEELEEQ 633
Query: 338 -IYYSNL 355
+YY ++
Sbjct: 634 RLYYVSM 640
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 287 KQAKADPEIPIEELSGDIYYS-NLEPFIRGTHP 382
K+AK DP P LS +YS + P I+ HP
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHP 158
>AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like
protein KLP-18 protein.
Length = 930
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 158 QEVRQTRDPITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGD 337
+ +R++ +KEKV N L L IDA RK E +K EEL
Sbjct: 573 ESLRKSEAVAEGYKEKVTANNLTLDKLLLHIDAS-RKRIAELELSSKESENRSSEELEEQ 631
Query: 338 -IYYSNL 355
+YY ++
Sbjct: 632 RLYYVSM 638
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,636,643
Number of Sequences: 27780
Number of extensions: 301790
Number of successful extensions: 1233
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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