Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K13
(596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alp... 118 2e-27
At1g24180.1 68414.m03050 pyruvate dehydrogenase E1 component alp... 117 5e-27
At1g01090.1 68414.m00011 pyruvate dehydrogenase E1 component alp... 82 3e-16
At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putativ... 73 1e-13
At5g34780.1 68418.m04048 dehydrogenase E1 component family prote... 66 1e-11
At5g09300.2 68418.m01077 2-oxoisovalerate dehydrogenase, putativ... 59 2e-09
At5g09300.1 68418.m01078 2-oxoisovalerate dehydrogenase, putativ... 59 2e-09
At4g16340.1 68417.m02476 adapter protein SPIKE1 (SPK1) One model... 30 1.0
At1g06780.1 68414.m00721 glycosyl transferase family 8 protein c... 30 1.0
At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase fa... 30 1.3
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 30 1.3
At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus s... 29 1.8
At5g61040.1 68418.m07660 expressed protein 29 2.4
At5g15740.1 68418.m01841 expressed protein contains Pfam PF03138... 29 3.1
At1g13330.1 68414.m01547 expressed protein similar to nuclear re... 28 4.1
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 28 5.4
At1g33230.1 68414.m04106 expressed protein 28 5.4
At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3... 27 7.2
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont... 27 7.2
At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate syntha... 27 7.2
At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containi... 27 7.2
At5g47210.1 68418.m05821 nuclear RNA-binding protein, putative s... 27 9.5
At5g13720.1 68418.m01597 expressed protein 27 9.5
At5g03320.1 68418.m00283 protein kinase, putative similar to ser... 27 9.5
At4g30680.1 68417.m04349 MA3 domain-containing protein similar t... 27 9.5
At4g20020.2 68417.m02930 expressed protein 27 9.5
At4g20020.1 68417.m02931 expressed protein 27 9.5
At3g08740.1 68416.m01016 elongation factor P (EF-P) family prote... 27 9.5
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 27 9.5
>At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alpha
subunit, mitochondrial (PDHE1-A) identical to SP|P52901
Pyruvate dehydrogenase E1 component alpha subunit,
mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
{Arabidopsis thaliana}
Length = 389
Score = 118 bits (285), Expect = 2e-27
Identities = 55/114 (48%), Positives = 79/114 (69%)
Frame = +2
Query: 2 GMDVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRD 181
GMD A ++A KFA + KGP+++EM+TYRY GHSMSDPG++YRTRDE+ VRQ RD
Sbjct: 256 GMDAFAVKQACKFAKQHALE-KGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERD 314
Query: 182 PITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGDIY 343
PI K+ V+++ L T +LK+++ ++RKE D+A +AK P EL ++Y
Sbjct: 315 PIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKDCPMPEPSELFTNVY 368
>At1g24180.1 68414.m03050 pyruvate dehydrogenase E1 component alpha
subunit, mitochondrial, putative similar to SP|P52901
Pyruvate dehydrogenase E1 component alpha subunit,
mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
{Arabidopsis thaliana}; contains Pfam profile PF00676:
Dehydrogenase E1 component
Length = 393
Score = 117 bits (282), Expect = 5e-27
Identities = 52/114 (45%), Positives = 79/114 (69%)
Frame = +2
Query: 2 GMDVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRD 181
GMD +A ++A KFA ++ GP+++EM+TYRY GHSMSDPG++YRTRDE+ VRQ RD
Sbjct: 260 GMDALAVKQACKFAKEHALKN-GPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQVRD 318
Query: 182 PITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGDIY 343
PI ++ ++ + + T +LK+++ ++RKE D+A QAK P EL ++Y
Sbjct: 319 PIERVRKLLLTHDIATEKELKDMEKEIRKEVDDAVAQAKESPIPDASELFTNMY 372
>At1g01090.1 68414.m00011 pyruvate dehydrogenase E1 component alpha
subunit, chloroplast identical to pyruvate dehydrogenase
E1 alpha subunit GB:AAB86803 GI:2454182 from
[Arabidopsis thaliana]; identical to cDNA pyruvate
dehydrogenase E1 alpha subunit mRNA, nuclear gene
encoding plastid protein GI:2454181
Length = 428
Score = 81.8 bits (193), Expect = 3e-16
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Frame = +2
Query: 2 GMDVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVR-QTR 178
GMDV+ RE K A+ G+GP L+E ETYR+ GHS++DP RD ++ + R
Sbjct: 289 GMDVLKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPD---ELRDAAEKAKYAAR 345
Query: 179 DPITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGDIY 343
DPI + K+ +I N+L +LK I+ K+ + +EA + A A P+ +L +++
Sbjct: 346 DPIAALKKYLIENKLAKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVF 400
>At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putative /
3-methyl-2-oxobutanoate dehydrogenase, putative /
branched-chain alpha-keto acid dehydrogenase E1 alpha
subunit, putative similar to branched-chain alpha-keto
acid dehydrogenase E1-alpha subunit [Gallus gallus]
GI:12964598; contains Pfam profile PF00676:
Dehydrogenase E1 component
Length = 472
Score = 72.9 bits (171), Expect = 1e-13
Identities = 37/114 (32%), Positives = 63/114 (55%)
Frame = +2
Query: 2 GMDVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRD 181
G D +A A + A + + + P+LIEM TYR HS SD T YR DE+Q + +R+
Sbjct: 328 GNDALAVYSAVRSAREMAVTEQRPVLIEMMTYRVGHHSTSDDSTKYRAADEIQYWKMSRN 387
Query: 182 PITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGDIY 343
P+ F++ V +N + + ++ + RK+ +A + A+ + P+ EL D+Y
Sbjct: 388 PVNRFRKWVEDNGWWSEEDESKLRSNARKQLLQAIQAAEKWEKQPLTELFNDVY 441
>At5g34780.1 68418.m04048 dehydrogenase E1 component family protein
similar to SP|P50136 2-oxoisovalerate dehydrogenase
alpha subunit, mitochondrial precursor (EC 1.2.4.4)
(Branched-chain alpha-keto acid dehydrogenase component
alpha chain) {Mus musculus}; contains Pfam profile
PF00676: Dehydrogenase E1 component
Length = 365
Score = 66.5 bits (155), Expect = 1e-11
Identities = 35/114 (30%), Positives = 60/114 (52%)
Frame = +2
Query: 2 GMDVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRD 181
G D +A A A + + + P+LIEM YR HS SD T YR DE+Q + +R+
Sbjct: 98 GNDALAVYSAVCSAREMAVTEQRPVLIEMMIYRVGHHSTSDDSTKYRAADEIQYWKMSRN 157
Query: 182 PITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGDIY 343
+ F++ V +N + + ++ + RK+ +A + A+ + P+ EL D+Y
Sbjct: 158 SVNRFRKSVEDNGWWSEEDESKLRSNARKQLLQAIQAAEKWEKQPLTELFNDVY 211
>At5g09300.2 68418.m01077 2-oxoisovalerate dehydrogenase, putative /
3-methyl-2-oxobutanoate dehydrogenase, putative /
branched-chain alpha-keto acid dehydrogenase E1 alpha
subunit, putative similar to branched-chain alpha-keto
acid dehydrogenase E1-alpha subunit [Gallus gallus]
GI:12964598; contains Pfam profile PF00676:
Dehydrogenase E1 component
Length = 401
Score = 59.3 bits (137), Expect = 2e-09
Identities = 31/114 (27%), Positives = 59/114 (51%)
Frame = +2
Query: 2 GMDVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRD 181
G D +A A A + + P+LIE TYR HS SD T YR+ E++ + R+
Sbjct: 257 GNDALAMYSAVHTAREMAIREQRPILIEALTYRVGHHSTSDDSTRYRSAGEIEWWNKARN 316
Query: 182 PITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGDIY 343
P++ F+ + +N + ++ ++++KE EA + A+ + ++ + D+Y
Sbjct: 317 PLSRFRTWIESNGWWSDKTESDLRSRIKKEMLEALRVAEKTEKPNLQNMFSDVY 370
>At5g09300.1 68418.m01078 2-oxoisovalerate dehydrogenase, putative /
3-methyl-2-oxobutanoate dehydrogenase, putative /
branched-chain alpha-keto acid dehydrogenase E1 alpha
subunit, putative similar to branched-chain alpha-keto
acid dehydrogenase E1-alpha subunit [Gallus gallus]
GI:12964598; contains Pfam profile PF00676:
Dehydrogenase E1 component
Length = 472
Score = 59.3 bits (137), Expect = 2e-09
Identities = 31/114 (27%), Positives = 59/114 (51%)
Frame = +2
Query: 2 GMDVIATREATKFAIDYCTSGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRD 181
G D +A A A + + P+LIE TYR HS SD T YR+ E++ + R+
Sbjct: 328 GNDALAMYSAVHTAREMAIREQRPILIEALTYRVGHHSTSDDSTRYRSAGEIEWWNKARN 387
Query: 182 PITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSGDIY 343
P++ F+ + +N + ++ ++++KE EA + A+ + ++ + D+Y
Sbjct: 388 PLSRFRTWIESNGWWSDKTESDLRSRIKKEMLEALRVAEKTEKPNLQNMFSDVY 441
>At4g16340.1 68417.m02476 adapter protein SPIKE1 (SPK1) One model
reflects the alignment of a full-length cDNA sequence
gi:18496702. There are multiple frame shifts in the gene
model resulting in a truncated protein. The alternate
model includes modifications in exons 14, 17 and 29 to
compensate for frame shifts and maximize the protein
length. It is not based on EST data. adapter protein
SPIKE1 [Arabidopsis thaliana] GI:18496703
Length = 1757
Score = 30.3 bits (65), Expect = 1.0
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Frame = +2
Query: 59 SGKGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKVINNQLVTPDQ 238
+ +GP+ + +YS +S +Y + QEVR P + + +N+QL +P Q
Sbjct: 999 NSRGPVSEGAGSPKYS-ERLSPAINNYLSEASRQEVRLEGTPDNGYLWQRVNSQLASPSQ 1057
Query: 239 ---LKEIDAKVRKETDEASKQAKADPEIPIEELSGDIYYSNL 355
L+E A+ + AS QA + PI +++ N+
Sbjct: 1058 PYSLREALAQAQSSRIGASAQALRESLHPILRQKLELWEENV 1099
>At1g06780.1 68414.m00721 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 589
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 65 KGPLLIEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKVIN--NQLVTPDQ 238
KGP LI + ++ + SD G +Y+ R+E V Q + K +++ NQL
Sbjct: 70 KGPRLILFKDGEFNSSAESDGGNTYKNREEQVIVSQKMTVSSDEKGQILPTVNQLANKTD 129
Query: 239 LKEIDAKVRKET 274
K +K K T
Sbjct: 130 FKPPLSKGEKNT 141
>At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase
family protein similar to inositol polyphosphate
5-phosphatase II isoform (GI:15418718) [Mus musculus];
contains 6 (5 weak) Pfam: Pf00400 WD domain, G-beta
repeats and Pfam PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 1101
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/66 (37%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Frame = +1
Query: 247 NRRESTQGNRRGFETG*GRP*DPNRGALRGH--ILLEP--GTFHPRHPPRGAVAAHPGRC 414
+RR S GN G G G P G I P HP PP V HP R
Sbjct: 64 DRRLSEDGNHDGIGDGNGSDSLPEFVGKCGESGIFKVPIRSAVHPNRPPSLDVRPHPLRE 123
Query: 415 TQIDRF 432
TQI RF
Sbjct: 124 TQIGRF 129
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 145 EGRGPGGAPDQGPDHLLQGEGHQQPTRHSRSVKGNRRESTQGNRRGF 285
+GRG GG D+G + +G+G H R G+R G RGF
Sbjct: 67 DGRGRGGGGDRGRGYSGRGDG------HGRGGGGDRGRGYSGRGRGF 107
>At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus
splice sites at intron 6
Length = 624
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 363 SSAAPTPGRSCSTSRSLHANRPFRNLKKKNINQFSGVVQ--VLH*TLIRGSGGVF 521
SS+ P G S S + R KKK +NQ +++ H T+I GS G F
Sbjct: 31 SSSDPITGNVASESPRDYGKRKRSKKKKKKVNQVETILENGDSHSTIITGSSGDF 85
>At5g61040.1 68418.m07660 expressed protein
Length = 590
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 158 QEVRQTRDPITSFKEKV-INNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSG 334
QE++QT + + ++++ + + L+ +KEID + E+ E+ +A+ E +E L
Sbjct: 263 QELKQTENLVHDLEDELEMKDTLI----VKEIDIEKAAESSESISNIEAELEAELERLEI 318
Query: 335 DIYYSNLE 358
++ SN+E
Sbjct: 319 NMNSSNIE 326
>At5g15740.1 68418.m01841 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 508
Score = 28.7 bits (61), Expect = 3.1
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +2
Query: 65 KGPLLIEMETYRYSGHSMSDPGTSYRTR-DEVQEVRQTRDPITSFKEKVINNQLVTPDQL 241
KGP L+ RY ++ G S+ +E +E+ + R +KEKVIN++L D L
Sbjct: 270 KGPFLVLH--LRYEMDMLAFSGCSHGCNPEEEEELTRMRYAYPWWKEKVINSELKRKDGL 327
Query: 242 KEIDAKVRKETDEASKQAKADPEIPIEELSGDIY 343
+ +ET D + I +G+IY
Sbjct: 328 CPL---TPEETALTLTALGIDRNVQIYIAAGEIY 358
>At1g13330.1 68414.m01547 expressed protein similar to nuclear
receptor coactivator GT198 (GI:16506273) {Rattus
norvegicus}; similar to TBP-1 interacting protein
(GI:7328534) [Homo sapiens]
Length = 226
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/51 (27%), Positives = 33/51 (64%)
Frame = +2
Query: 140 RTRDEVQEVRQTRDPITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQ 292
+ ++++QE ++T + S + + +N +T ++++E DAK+RKE E ++
Sbjct: 90 KLQEQLQEKKKTISDVESEIKSLQSN--LTLEEIQEKDAKLRKEVKEMEEK 138
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -3
Query: 234 SGVTSWLLMTF--SLKEVIGSLVWRTSWTSSLVRYDVPGSDIEC 109
SG T L+ F +LK I WT V +DVPG ++C
Sbjct: 300 SGKTDVLISRFGETLKGGISVTRMEEKWTIDDVAFDVPGLSVDC 343
>At1g33230.1 68414.m04106 expressed protein
Length = 347
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/62 (22%), Positives = 30/62 (48%)
Frame = +2
Query: 155 VQEVRQTRDPITSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSG 334
V++V++ D TSF +L ++ +D+ +R+ + DP++ E+L
Sbjct: 12 VEQVKELHDSSTSFVSSSSQEELSLRNRASVVDSSIRRLHSTLASDKHLDPKL-FEKLEE 70
Query: 335 DI 340
D+
Sbjct: 71 DL 72
>At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3)
family protein contains Pfam profile: PF05879 root hair
defective 3 GTP-binding protein (RHD3) family
Length = 834
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 128 GTSYRTRDEVQEVRQTRDPI--TSFKEKVINNQLVTPDQLKEIDAKVRKETDEASKQA 295
GT + V + DP+ +S++E NN L+TP Q K + + + ET+ QA
Sbjct: 612 GTVSAASSHNRSVGTSTDPLASSSWEEVPPNNILLTPVQCKSLWRQFKSETEYTVTQA 669
>At2g20210.1 68415.m02363 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 604
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = -3
Query: 270 SLRTFASISFN*SGVTSWLLMTFSLKEVIGSLVWRTSWTSSLVRYDVPGSDIE 112
S +S+ + + ++ WL TFS K V+GSL S SL + ++ G++++
Sbjct: 318 SSSNLSSLDLSENNISGWL-STFSCKSVVGSLSSGKS-LQSLCKLNLRGNELD 368
>At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate synthase,
UDP-forming, putative / trehalose-6-phosphate synthase,
putative / UDP-glucose-glucosephosphate
glucosyltransferase, putative similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325; contains Pfam profiles
PF00982: Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 942
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 209 INNQLVTPDQLKEIDAKVRKETDEASKQAKADPEIPIEELSG 334
++NQ DQ+KE+D + E K +DP I LSG
Sbjct: 604 VDNQGRRGDQIKEMDLNLHPELKGPLKALCSDPSTTIVVLSG 645
>At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 753
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 193 LQGEGHQQPTRHSRSVKGNRRESTQGNRRGFE 288
L GE + HS KG RR+ +GN RGF+
Sbjct: 22 LMGERGKSSNNHSERNKGMRRKDHKGN-RGFD 52
>At5g47210.1 68418.m05821 nuclear RNA-binding protein, putative
similar to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 357
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 241 KGNRRESTQGNRRGFETG*GRP*DPNRGALRG 336
+ NR GN GF G RP + GA RG
Sbjct: 85 RDNRNNDAPGNENGFSGGYRRPSEDADGASRG 116
>At5g13720.1 68418.m01597 expressed protein
Length = 262
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 502 GGQEGSLIC*YLGGCERLFEEFRKFW 579
G GSL+C +L GC + E ++ +W
Sbjct: 100 GSLAGSLLC-FLNGCVYIVEAYKVYW 124
>At5g03320.1 68418.m00283 protein kinase, putative similar to
serine/threonine-protein kinase NAK [Arabidopsis
thaliana] SWISS-PROT:P43293
Length = 420
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 172 LAHLLDLVPRAVRRSRVGHRMPRVSVRFHLNQKRP 68
L H + R ++R V MP SV FHL+ + P
Sbjct: 147 LGHCAEDDERGIQRLLVYEYMPNQSVEFHLSPRSP 181
>At4g30680.1 68417.m04349 MA3 domain-containing protein similar to
SP|Q03387 Eukaryotic initiation factor (iso)4F subunit
P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum};
contains Pfam profile PF02847: MA3 domain
Length = 263
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 151 RGPGGAPDQGPDHLLQGEGHQQP 219
+G GG + P L+QG G QQP
Sbjct: 46 KGSGGLLNDRPSALVQGNGSQQP 68
>At4g20020.2 68417.m02930 expressed protein
Length = 406
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/63 (28%), Positives = 22/63 (34%)
Frame = +1
Query: 127 GNVVPHEGRGPGGAPDQGPDHLLQGEGHQQPTRHSRSVKGNRRESTQGNRRGFETG*GRP 306
G P +G G P QG QG+G Q P R + G+ G G P
Sbjct: 224 GQQPPMQGGGGSYGPQQGYATPGQGQGTQAPPPFQGGYNQGPRSPPPPYQAGYNQGQGSP 283
Query: 307 *DP 315
P
Sbjct: 284 VPP 286
>At4g20020.1 68417.m02931 expressed protein
Length = 419
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/63 (28%), Positives = 22/63 (34%)
Frame = +1
Query: 127 GNVVPHEGRGPGGAPDQGPDHLLQGEGHQQPTRHSRSVKGNRRESTQGNRRGFETG*GRP 306
G P +G G P QG QG+G Q P R + G+ G G P
Sbjct: 224 GQQPPMQGGGGSYGPQQGYATPGQGQGTQAPPPFQGGYNQGPRSPPPPYQAGYNQGQGSP 283
Query: 307 *DP 315
P
Sbjct: 284 VPP 286
>At3g08740.1 68416.m01016 elongation factor P (EF-P) family protein
similar to SP|P33398 Elongation factor P (EF-P)
{Escherichia coli O157:H7}; contains Pfam profile
PF01132: Elongation factor P (EF-P)
Length = 236
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -2
Query: 406 LDVLQLRPGVGAADERFQVRVIYVPGELLYWDLRVGLSL 290
L+ L ++PG GAA R ++R YV G + R G+S+
Sbjct: 74 LEFLHVKPGKGAAFVRTKIR-NYVNGSTVERTFRAGISV 111
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
{Homo sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 233 DQLKEIDAKVRKETDEASKQAKADPEIPIEELSGDIYYSNLE 358
D E D + +E +E +K ++P +E+ D YY E
Sbjct: 143 DSENENDNENEEEDNEMNKHQSGQADVPADEMLSDEYYEQDE 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,039,394
Number of Sequences: 28952
Number of extensions: 281527
Number of successful extensions: 926
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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