Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K10
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 26 3.6
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 26 3.6
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 4.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 4.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 4.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 4.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 4.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 4.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 4.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 4.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 4.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 4.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 4.7
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 25 6.2
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 8.3
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 4 NYNNPSSATPLLVPSALEHYQTALTDPAFYMIWKRVLKMFSLLHQRL 144
N ++P + + P L A T+P ++++ L++ SL HQRL
Sbjct: 230 NKSSPFGSATVQTP-CLHSVPDAFTNPDVATLYQKFLRLQSLEHQRL 275
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 356 KLQVKLPRRWRLSFSWHLNMTAAVLRSHYMSTQRISSC*ITSF 484
+L V L ++ L H+ + LR+H++ST R I SF
Sbjct: 246 ELNVSLFKKNELDLRHHIKVLRDTLRNHWVSTTRDLKADIKSF 288
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 481 IHELPAGESVIVKESTENLFTVDDFKSAYEI 573
I+ LP E ++ K +FT D KSAY +
Sbjct: 479 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHL 509
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 481 IHELPAGESVIVKESTENLFTVDDFKSAYEI 573
I+ LP E ++ K +FT D KSAY +
Sbjct: 479 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHL 509
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 481 IHELPAGESVIVKESTENLFTVDDFKSAYEI 573
I+ LP E ++ K +FT D KSAY +
Sbjct: 479 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHL 509
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 481 IHELPAGESVIVKESTENLFTVDDFKSAYEI 573
I+ LP E ++ K +FT D KSAY +
Sbjct: 479 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHL 509
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 481 IHELPAGESVIVKESTENLFTVDDFKSAYEI 573
I+ LP E ++ K +FT D KSAY +
Sbjct: 479 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHL 509
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 481 IHELPAGESVIVKESTENLFTVDDFKSAYEI 573
I+ LP E ++ K +FT D KSAY +
Sbjct: 479 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHL 509
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 481 IHELPAGESVIVKESTENLFTVDDFKSAYEI 573
I+ LP E ++ K +FT D KSAY +
Sbjct: 479 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHL 509
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 481 IHELPAGESVIVKESTENLFTVDDFKSAYEI 573
I+ LP E ++ K +FT D KSAY +
Sbjct: 479 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHL 509
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 481 IHELPAGESVIVKESTENLFTVDDFKSAYEI 573
I+ LP E ++ K +FT D KSAY +
Sbjct: 479 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHL 509
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 481 IHELPAGESVIVKESTENLFTVDDFKSAYEI 573
I+ LP E ++ K +FT D KSAY +
Sbjct: 479 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHL 509
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 481 IHELPAGESVIVKESTENLFTVDDFKSAYEI 573
I+ LP E ++ K +FT D KSAY +
Sbjct: 479 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHL 509
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 402 QEKLNLHLLGNFTCNLDPNVEFLM 331
QE++ L +L NFTC + +V+FL+
Sbjct: 528 QEQM-LQVLRNFTCQKEESVDFLL 550
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +1
Query: 181 VAIQKVEVDKLVTYYEYTYVNISASVHMNEVQSQL 285
V++ + ++D Y+E YV+ S S+ +++ L
Sbjct: 1356 VSVGQAKLDNFTVYFENVYVSASLSILRRFIETSL 1390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,333
Number of Sequences: 5004
Number of extensions: 44220
Number of successful extensions: 130
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -