Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K09
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381...    29   3.8  
10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020     28   5.0  
10_08_0041 - 14374684-14377339,14377371-14378233                       27   8.7  

>12_01_1073 +
           11135853-11137388,11137627-11137846,11137990-11138178,
           11138257-11138457,11138547-11139246,11163479-11164106
          Length = 1157

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +3

Query: 348 HQPPSTGGTSRQTIEKCAENCISTPEYNPVCG 443
           H P  TG TS   I   A NC+S  E  P CG
Sbjct: 317 HGPRGTGKTSTARIFAAALNCLSLEEQRP-CG 347


>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
          Length = 722

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 490 WAQNSLPWFL*VLLSL--PHTGLYSGVEMQFSA 398
           W +N +  F  VL +L  PH  LY  V+M+F+A
Sbjct: 333 WQENCMEQFKLVLEALHQPHRNLYIAVDMEFTA 365


>10_08_0041 - 14374684-14377339,14377371-14378233
          Length = 1172

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 490 WAQNSLPWFL*VLLSL--PHTGLYSGVEMQFSA 398
           W +N +  F  VL +L  PH  LY  V+M+F+A
Sbjct: 652 WRENCMEQFKLVLEALHQPHRHLYIAVDMEFAA 684


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,180,932
Number of Sequences: 37544
Number of extensions: 385408
Number of successful extensions: 760
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)