Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K09
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con...    33   0.11 
At4g24790.1 68417.m03550 expressed protein ; expression supporte...    30   1.0  
At2g27570.1 68415.m03340 sulfotransferase family protein similar...    27   7.3  
At1g01690.1 68414.m00087 expressed protein                             27   7.3  
At5g60970.1 68418.m07648 TCP family transcription factor, putati...    27   9.6  
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    27   9.6  
At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein con...    27   9.6  

>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Cyanogenic Beta-Glucosidase
           (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
           beta-glucosidase GI:10834547
          Length = 577

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +2

Query: 131 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQY 256
           + Y ++  NN  ++I +NG N + DG +P    +++ +RI+Y
Sbjct: 394 LNYIKERYNNMPVYIKENGINDNDDGTKPREEIVKDTFRIEY 435


>At4g24790.1 68417.m03550 expressed protein ; expression supported
           by MPSS
          Length = 815

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = +3

Query: 297 LIKCSSQTKHRYQVKGK---HQPPSTGGTSRQTIEKCAENCISTPEYNPVCG--SDNKTY 461
           ++KC   T  R ++      H P  TG TS   I   A NC+S   ++  CG  S+ K+Y
Sbjct: 259 VVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALNCLSQAAHSRPCGLCSECKSY 318

Query: 462 -KNQGR 476
              +GR
Sbjct: 319 FSGRGR 324


>At2g27570.1 68415.m03340 sulfotransferase family protein similar to
           steroid sulfotransferase from [Brassica napus]
           GI:3420008, GI:3420006; contains Pfam profile PF00685:
           Sulfotransferase domain
          Length = 273

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 225 IHSGRFPS*DLFHPFLSINKFALFS 151
           +H  + PS D  HP LS N   LFS
Sbjct: 88  VHRSKHPSHDHHHPLLSNNPHVLFS 112


>At1g01690.1 68414.m00087 expressed protein
          Length = 742

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 435 RGCILVLKCNSPRISQLFVVMFHQC*EVD 349
           + C +VLK   PR  + F+V+  QC  VD
Sbjct: 590 KSCHIVLKALFPRFKKRFIVISCQCNSVD 618


>At5g60970.1 68418.m07648 TCP family transcription factor, putative
           putative basic helix-loop-helix DNA binding protein
           TCP2, Arabidopsis thaliana, EMBL:AF072691
          Length = 360

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 173 IDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDNNYN 277
           +DK  W K+ + +  +       ++ Q+PL N YN
Sbjct: 192 LDKGKWIKNDENSNQDHQGFNTNHQQQFPLTNPYN 226


>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein similar
            to alpha-mannosidase II SP:P27046 from [Mus musculus]
          Length = 1173

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 131  IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPL 262
            +RYK  ++N    + D NG+  S+     + IP+Q  Y   YP+
Sbjct: 883  VRYKTDVDNKKVFYSDLNGFQMSRRETYDK-IPLQGNY---YPM 922


>At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 582

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 131 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDN 268
           + Y +   NN  ++I +NG N   DG +     + + +RI Y  D+
Sbjct: 396 LNYIKDKYNNPIVYIKENGINDYDDGTKSREEILNDTFRISYHEDH 441


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,061,081
Number of Sequences: 28952
Number of extensions: 321263
Number of successful extensions: 701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)