Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K08
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    29   0.25 
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   3.0  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   4.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   4.0  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   5.3  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   7.0  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   7.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   7.0  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.3  

>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 93  GLHEFRNNIGFRVLVRVFLQHIFPRD 16
           G H+FR N+G    +R FL  IF  D
Sbjct: 69  GYHQFRKNVGKEAKLRAFLPQIFGGD 94


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 160 PVPFATHLCERRPHHAVACPF*RSP 86
           PVPFAT L +  PH  +  P   +P
Sbjct: 123 PVPFATRLLQSTPHRQLFPPTPSTP 147


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 26  NICWRKTRTSTRNPMLLRNSWRPS 97
           +IC  KT T T+  M+ R  W PS
Sbjct: 364 DICSDKTGTITQGKMITRRVWIPS 387


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 293 DLWKTAAVRAYTNMPPLMRSLN 228
           DL     V  Y+N+PP +R+LN
Sbjct: 896 DLIDLLYVNGYSNLPPFVRALN 917


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
 Frame = +1

Query: 25  EYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNALQMEQAVKVFRILYFAKDYD 204
           E+M  E   KY+   +++ +  ++K       E+  + NA  +E  +    + ++   Y 
Sbjct: 208 EFMPYEPLLKYNSYRLLSTYENSYK----ELSEMLTNNNA-PLEVLIHHVMLYHY---YP 259

Query: 205 YFIKTACW------LRERINGGMFVYALTAAVFHRSDCVGITLPAPYEIYPY 342
            F+++A W      L ER N G++   L  A       + +    P +IY +
Sbjct: 260 SFLQSALWTAVSSYLEERCNNGLYSKLLVKAAKQHFGDIRLYFVTPDDIYTF 311


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
 Frame = +1

Query: 232 RERINGGMFVYALTAAVFHRSDCVGITLPA---PYEIYPY------FFVDSHVINKAFMM 384
           R +  G   V+   A  F  ++ VG+       P + +P       F +    I   F++
Sbjct: 266 RHKFKGFCAVFTSAAFSFSGTEYVGVAAAETENPAKAFPVAVRQTLFRIAIFYILSLFIV 325

Query: 385 KMTKAGTDPVLMNYYGINVT 444
            +  +G DP L +Y+G++ +
Sbjct: 326 SLLISGADPRLTSYHGVDAS 345


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 320 AGRVIPTQSDLWKTAAVRAYTNMPPLMRSL 231
           + +V  T  + W   A   YTN+ PLM +L
Sbjct: 259 SAQVSGTTGEYWFRFATAGYTNLNPLMFAL 288


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
 Frame = +1

Query: 292  SDCVGITLPAPYEIYPYFFVDSHVINKAFM---------MKMTKAGTDPVL 417
            SD +   L A   I PYFF++S   N  F+         +  TK GT+P+L
Sbjct: 1625 SDVLIPALLAAGAIIPYFFINSQPGNPMFITDPNNPSPYVHDTKTGTNPIL 1675


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 282 LPQV*LRRYYSTRS 323
           +PQ  LRRYYSTR+
Sbjct: 147 VPQKSLRRYYSTRT 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,622
Number of Sequences: 5004
Number of extensions: 37630
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)