Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K08
(446 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0249 - 1644280-1645161,1645328-1645432,1646322-1646805,164... 33 0.079
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241... 30 0.74
03_05_1137 + 30652967-30653183,30653281-30653485,30653696-306537... 30 0.97
03_05_1136 + 30634685-30634919,30635008-30635303,30635398-306357... 30 0.97
07_01_0504 + 3756714-3757054,3757205-3757259,3757403-3757477,375... 28 3.9
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 28 3.9
12_02_0503 - 19756561-19757991,19758606-19759967 27 5.2
06_01_0251 - 1890143-1891180 27 5.2
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 27 6.9
05_03_0474 + 14481063-14481403,14481597-14481710,14483428-144836... 27 6.9
12_02_0771 - 23013984-23014358,23015168-23015980 27 9.1
11_07_0012 + 27346844-27346949,27347152-27347756 27 9.1
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 27 9.1
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 27 9.1
09_02_0269 - 6527150-6527754,6527957-6528062 27 9.1
07_01_0993 - 8377720-8377800,8379924-8380406,8380622-8381132,838... 27 9.1
04_04_0746 + 27726736-27727118,27727518-27727544,27728042-277281... 27 9.1
>02_01_0249 -
1644280-1645161,1645328-1645432,1646322-1646805,
1647680-1647884,1648538-1648808
Length = 648
Score = 33.5 bits (73), Expect = 0.079
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -3
Query: 333 NLVRSG*SNTDAVRPVEDCSSESIYEHAPVNAFP*P-ASSFDEVVIVLGEVQYAENFNGL 157
+L G + D +R D ++E ++ AP F A FD V+V+GE YAE
Sbjct: 481 DLTAGGTTILDGIRRAVDAATEVVFAEAPDAGFMRRNAGRFDAAVVVVGEPPYAETLGDN 540
Query: 156 FHL 148
+L
Sbjct: 541 LNL 543
>05_05_0051 +
21923402-21923763,21923861-21923951,21924048-21924196,
21924279-21924522,21924664-21924768,21924842-21925024,
21925118-21925319,21925896-21926372,21926680-21926771,
21927265-21927444
Length = 694
Score = 30.3 bits (65), Expect = 0.74
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 303 DAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAE 172
+A++ +E +YE P A F V+V+GEV YAE
Sbjct: 451 EAIKESVGAETEVVYEECPTEATV-ETGEFSYAVVVVGEVPYAE 493
>03_05_1137 +
30652967-30653183,30653281-30653485,30653696-30653786,
30653904-30654046,30654186-30654429,30654536-30654640,
30654985-30655167,30655255-30655459,30655552-30656036
Length = 625
Score = 29.9 bits (64), Expect = 0.97
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = -3
Query: 333 NLVRSG*SNTDAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAENFNGLF 154
N + +G + A++ D S+ +Y P ++ +D ++V+GE YAE F
Sbjct: 460 NNITAGTTILSAIKATVDPSTTVVYSENPDSSVV-TGDKYDYAIVVVGEPPYAEGFGDNL 518
Query: 153 HL 148
+L
Sbjct: 519 NL 520
>03_05_1136 +
30634685-30634919,30635008-30635303,30635398-30635790,
30635856-30636348,30636422-30636918
Length = 637
Score = 29.9 bits (64), Expect = 0.97
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = -3
Query: 438 VYPVIVHKHRVGASFSHLHHEGFVDDMGV--YKEVRVNLVRSG*SNTDAVRPVEDCSSES 265
V P+ ++ + SH H+ GF ++ N V +G + +A++ D S+
Sbjct: 431 VLPLSKKADKILVAGSHAHNLGFQCGGWTVSWQGQGGNNVTAGTTILEAIKAAVDESTVI 490
Query: 264 IY-EHAPVNAFP*PASSFDEVVIVLGEVQYAE 172
Y EH ++ A +D V+V+GE YAE
Sbjct: 491 DYTEHPDKSSIAESAKEYDYAVVVVGEEPYAE 522
>07_01_0504 +
3756714-3757054,3757205-3757259,3757403-3757477,
3757638-3757729,3757914-3757995,3758138-3758221,
3758326-3758445
Length = 282
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 188 KYSMRKTLTACSICNAFV*TKTSPRGSMPILKV 90
K+ +TACS CN+ KT + +M +LKV
Sbjct: 209 KWEWENLVTACSRCNSRKGQKTVEQANMKLLKV 241
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 441 NVYPVIVHKHRVGASFSHLHHEGFVDDMGVYKEVR 337
N++P + + +VG + H + F DD YK +R
Sbjct: 69 NIFPPVATEGKVGEYWYHEDSQAFFDDAEHYKMIR 103
>12_02_0503 - 19756561-19757991,19758606-19759967
Length = 930
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 54 VLEIR-CCYEIHGDLQNGHATAW*GL-RSHKC 143
VL+I CC E+HG+ Q+G + W + R H C
Sbjct: 894 VLDINGCCNELHGECQSG-GSEWSKICRIHSC 924
>06_01_0251 - 1890143-1891180
Length = 345
Score = 27.5 bits (58), Expect = 5.2
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 402 HRPCAYELLRDKR 440
HRPC +E LRDKR
Sbjct: 41 HRPCEFEELRDKR 53
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 4 DIKEVAREYMLEENTDKYSKSDVVT 78
DIK+V ++ ++E N D+Y DV T
Sbjct: 232 DIKKVLKDILIEVNKDRYMVLDVST 256
>05_03_0474 +
14481063-14481403,14481597-14481710,14483428-14483676,
14485844-14486225
Length = 361
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 280 VFHRSDCVGITLPAPYEIYPYFFVDSHVINK 372
VFHR+ + + Y+ P FF DS+ +N+
Sbjct: 256 VFHRAQGIQLCNIQAYQCTPAFFADSYQLNQ 286
>12_02_0771 - 23013984-23014358,23015168-23015980
Length = 395
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 10 KEVAREYMLEENTDKYSKSDVVTKFME 90
+E EY L EN D YS S + K ME
Sbjct: 98 EERINEYELSENIDNYSFSSYLPKSME 124
>11_07_0012 + 27346844-27346949,27347152-27347756
Length = 236
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 35 WRKTRT--STRNPML-LRNSWRPSKWACYRVVRSSFTQMRCKWNRPLKFSAYCTS 190
WR TR +TR M RN + P Y + SSFT++ +W R SA S
Sbjct: 139 WRLTRGRGATRGTMAGERNGYSPFPLR-YLPLASSFTKLTARWGRGAACSAAAES 192
>11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 10 KEVAREYMLEENTDKYSKSDVVTKFME 90
+E EY L EN D YS S + K ME
Sbjct: 939 EERINEYELSENIDNYSFSSYLPKSME 965
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 10 KEVAREYMLEENTDKYSKSDVVTKFME 90
+E EY L EN D YS S + K ME
Sbjct: 550 EERINEYELSENIDNYSFSSYLPKSME 576
>09_02_0269 - 6527150-6527754,6527957-6528062
Length = 236
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 35 WRKTRT--STRNPML-LRNSWRPSKWACYRVVRSSFTQMRCKWNRPLKFSAYCTS 190
WR TR +TR M RN + P Y + SSFT++ +W R SA S
Sbjct: 139 WRLTRGRGATRGTMAGERNGYSPFPLR-YLPLASSFTKLTARWGRGAACSAAAES 192
>07_01_0993 -
8377720-8377800,8379924-8380406,8380622-8381132,
8381174-8381586
Length = 495
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 74 LRNSWRPSKWACYRVVRSSFTQMRCKWNRPLKFSAYCTSPRTMTTSS 214
L R + A YR + +S + R +AYC SP T SS
Sbjct: 83 LMEGLRTTGSAAYRALLASLVVRAAAYGRASSPTAYCRSPSTSPRSS 129
>04_04_0746 +
27726736-27727118,27727518-27727544,27728042-27728126,
27729252-27729809
Length = 350
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +1
Query: 289 RSDCVGITLPAPYEIYPYFFVDSHVINKAFMMKMTKAGTDPVLMNYYGINVT 444
+++ +G+ + P ++ NKA ++ +AGT V ++Y+ I+VT
Sbjct: 105 KANVLGVVVNIPVKLSLLVNYCGKKFNKAIYLRRRRAGTVAVAISYHIISVT 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,233,704
Number of Sequences: 37544
Number of extensions: 258720
Number of successful extensions: 648
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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