Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K08
         (446 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6)                    30   1.0  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)                  27   5.3  
SB_10005| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_56953| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6)
          Length = 339

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 363 DMGVYKEVRVNLVRSG*SNTDAVRPVEDCSSESIY 259
           +MG    V+ N +RSG  +TD   PV    S+S+Y
Sbjct: 151 NMGWASNVKDNWIRSGDYHTDTAHPVNITDSQSLY 185


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 325  YEIYPYFFVDSHVINKAFMMKMTK 396
            +++YP F++D+H+ NKA +  + K
Sbjct: 1787 HDVYPQFYLDTHLTNKAVLEAVDK 1810


>SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 2   RTSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKW 103
           R  + S   I WR    S+R+P L+R S   S W
Sbjct: 205 RIIKNSNYEILWRALGLSSRSPTLMRGSLTVSVW 238


>SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)
          Length = 1497

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 145  THLCERRPHHAVACPF*RSP*IS-*QHRISSTCPCFPPAYIP 23
            T L ERR  H V+C   RSP  S  Q R     P  P A+ P
Sbjct: 1275 TELTERRKRHFVSCNTLRSPVASEPQGREGLRAPKMPSAHTP 1316


>SB_10005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 322 PYEIYPYFFVDSHVINKAFMMKMTKAGTDPVLMNYYG 432
           PY    Y  V     N+A M   T  G +PVL  +YG
Sbjct: 57  PYSTRYYQAVTHPSTNRALMSLTTVIGREPVLSQWYG 93


>SB_56953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 23  GNICWRKTRTSTRNPMLLRNSWRPSKWACYRVVRSSFTQMRCKWN 157
           G I   + + +     LL   +  S   C+R+ R   +Q +CKWN
Sbjct: 691 GMIADAEKKCTVCGTQLLFQGYTKSHPQCFRIDRLDDSQGQCKWN 735


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,175,158
Number of Sequences: 59808
Number of extensions: 314137
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)