Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K08
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical p...    27   4.7  
Z92831-2|CAB07368.2|  861|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical
           protein Y20C6A.2 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = -1

Query: 170 TLTACS----ICNAFV*TKTSPRGSMPILKV--SMNFVTTSDFEYLSVF 42
           T TAC     +C  F   K++ + ++  L V  S NFV++ DFE L++F
Sbjct: 437 TQTACEFQNFVCQKFTDLKSAKKCTLNDLLVMESQNFVSSIDFEELNLF 485


>Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical
           protein R10D12.10 protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = +2

Query: 89  RPSKWACYRVVRSSFTQMRCKWNRPLKFSAYCTSPRTMTTS 211
           RP     Y ++ +  T M  KW  P+ F      P   + S
Sbjct: 277 RPDYGKIYEILAAKMTSMGVKWTDPMDFDLQADKPNYFSKS 317


>Z92831-2|CAB07368.2|  861|Caenorhabditis elegans Hypothetical
           protein F22G12.4 protein.
          Length = 861

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 194 LAKYSMRKTLTACSICNAFV*TKTSPR 114
           +AKY   K +  C +C   + T T+PR
Sbjct: 834 IAKYGEEKRVRVCDVCAHVISTGTAPR 860


>Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical
           protein T06C12.8 protein.
          Length = 669

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 361 VINKAFMMK---MTKAGTDPVLMNYYGINVT 444
           VI K+ +MK   M K GTDPV+++   IN T
Sbjct: 513 VITKSIVMKIAPMLKNGTDPVVIDKMLINAT 543


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,256,092
Number of Sequences: 27780
Number of extensions: 216063
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)