Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K08
(446 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g43780.1 68414.m05043 serine carboxypeptidase S10 family prot... 31 0.47
At5g58050.1 68418.m07265 glycerophosphoryl diester phosphodieste... 30 0.62
At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein bet... 30 0.62
At4g26690.1 68417.m03846 glycerophosphoryl diester phosphodieste... 29 1.1
At5g55480.1 68418.m06910 glycerophosphoryl diester phosphodieste... 29 1.9
At5g27290.1 68418.m03258 expressed protein predicted proteins, A... 28 2.5
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu... 28 2.5
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu... 28 2.5
At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containi... 28 3.3
At1g66970.1 68414.m07615 glycerophosphoryl diester phosphodieste... 28 3.3
At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein bet... 27 5.8
At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7)... 27 5.8
At1g29940.1 68414.m03658 DNA-directed RNA polymerase family prot... 27 5.8
At1g19570.1 68414.m02437 dehydroascorbate reductase, putative si... 27 5.8
At1g19550.1 68414.m02435 dehydroascorbate reductase, putative si... 27 5.8
At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containi... 27 7.6
At3g47040.1 68416.m05108 glycosyl hydrolase family 3 protein bet... 27 7.6
At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger) fa... 27 7.6
>At1g43780.1 68414.m05043 serine carboxypeptidase S10 family protein
similar to serine carboxylase II-3 GB:CAA55478 GI:474392
from [Hordeum vulgare]
Length = 479
Score = 30.7 bits (66), Expect = 0.47
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 292 SDCVGITLPAPYEIYPYFFVDSHVINKAFMMKMTKAGT-DPVLMNYYGI 435
SD +G+T+ + Y F DSH I+K + +AGT +NYY I
Sbjct: 242 SDELGLTIMNQCDFEDYTFTDSHNISKLCEAAVNQAGTIITQYVNYYDI 290
>At5g58050.1 68418.m07265 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family;
similar to Glycerophosphoryl diester phosphodiesterase
precursor (Glycerophosphodiester phosphodiesterase)
(Surface-exposed lipoprotein D) (Protein D)
(ImmunoglobulinD-binding protein) (IGD-binding protein)
(SP:Q06282) {Haemophilus influenzae}
Length = 753
Score = 30.3 bits (65), Expect = 0.62
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +1
Query: 163 VKVFRILYFAKDYDYF----IKTACWLRER-INGGMFVYALTAAVFHRSDCVGITLPAPY 327
V V R Y A +DYF I+ A ++ R ++G + + TA + RS C + PY
Sbjct: 608 VSVLRNEYIAIAFDYFSDPTIELATFIAGRGVDGVITEFPATATRYLRSPCSDLNKDQPY 667
Query: 328 EIYP 339
I P
Sbjct: 668 AILP 671
>At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein
beta-glucosidase, common nasturtium, PIR:T10521
Length = 626
Score = 30.3 bits (65), Expect = 0.62
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 300 AVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAENF 166
AV+ D ++ IY P F A FD ++ +GE YAE F
Sbjct: 476 AVKKTVDPKTQVIYNQNPDTNFV-KAGDFDYAIVAVGEKPYAEGF 519
>At4g26690.1 68417.m03846 glycerophosphoryl diester
phosphodiesterase family protein weak similarity to
glycerophosphodiester phosphodiesterase [Borrelia
hermsii] GI:1399038; contains Pfam profile PF03009:
Glycerophosphoryl diester phosphodiesterase family
Length = 759
Score = 29.5 bits (63), Expect = 1.1
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Frame = +1
Query: 28 YMLEENTDKYSKSDV--VTKFMETF---KMGMLPRGEVFVHTNA-----LQMEQA---VK 168
Y +EEN S + + KF + K+ + P + F+ T LQ Q V+
Sbjct: 557 YKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQTNVVEKLQKSQLPVYVE 616
Query: 169 VFRILYFAKDYDYFIKTACWLRERI-----NGGMFVYALTAAVFHRSDCVGITLPAPY 327
+F+ + ++ YD+F + I NG + + TAA + R+ C+G PY
Sbjct: 617 LFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPFTAARYKRNLCLGRKETIPY 674
>At5g55480.1 68418.m06910 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family;
similar to Glycerophosphoryl diester phosphodiesterase
precursor (Glycerophosphodiester phosphodiesterase)
(Surface-exposed lipoprotein D) (Protein D)
(ImmunoglobulinD-binding protein) (IGD-binding protein)
(SP:Q06282) {Haemophilus influenzae}
Length = 766
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +1
Query: 148 QMEQAVKVFRILYFAKDYDYFIKTACWLRER-----INGGMFVYALTAAVFHRSDCVGIT 312
Q+ V+VFR + ++ +D+F + ING + + LTAA + R+ C+
Sbjct: 617 QLPVYVEVFRNEFVSQPWDFFADATVEINSHVTGAGINGTITEFPLTAARYKRNSCLTRK 676
Query: 313 LPAPYEI 333
PY I
Sbjct: 677 DVPPYMI 683
>At5g27290.1 68418.m03258 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 341
Score = 28.3 bits (60), Expect = 2.5
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +1
Query: 82 FMETFKMGMLPRGEVFVHTNALQMEQAVKVFRILYFAKDYDYFIKTACWLRERINGGMFV 261
F+ + +G+LPRG ALQ E ++ + F DY++ E +N G
Sbjct: 191 FLVAYLVGILPRGYTLSSLEALQKEGSLNIQAGSAFV-DYEFL--------EEVNSG--- 238
Query: 262 YALTAAVFHRSDCVGIT-LPAPYEIYPY 342
++A + +R C+ + + Y +Y Y
Sbjct: 239 -KVSATMLNRFSCIALAGVATEYLLYGY 265
>At2g27110.2 68415.m03258 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 121 EVFVHT-NALQMEQAVKVFRILYFAKDYDYFIKTACWLRERIN 246
E F HT N ++ + FR+ F D +I T C+ R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537
>At2g27110.1 68415.m03257 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 121 EVFVHT-NALQMEQAVKVFRILYFAKDYDYFIKTACWLRERIN 246
E F HT N ++ + FR+ F D +I T C+ R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537
>At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 620
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 67 DVVTKFMETFKMGMLPRGEVFVHT-NALQMEQAVKVFRILYFAKDYDYFIK 216
+ ++KFME KMG+ P F A V+ ++++++ + DY +K
Sbjct: 331 EAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLK 381
>At1g66970.1 68414.m07615 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family
Length = 763
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 148 QMEQAVKVFRILYFAKDYDYFIKTACWLRERI-----NGGMFVYALTAAVFHRSDCVGIT 312
Q+ V++FR + ++ YD+F + I NG + + TAA + R+ C+G
Sbjct: 617 QLPVYVELFRNEFVSQAYDFFSDATVEINAYIYGAGINGTITEFPFTAARYKRNRCLGRE 676
Query: 313 LPAPY 327
PY
Sbjct: 677 EVPPY 681
>At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 608
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 303 DAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAE 172
DA++ +E IYE P + F ++ +GE YAE
Sbjct: 453 DAIKEAVGDETEVIYEKTPSKETLASSEGFSYAIVAVGEPPYAE 496
>At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 418
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 6 HQGSREGIYAGGKHGQV 56
H GS+E +YAGG G V
Sbjct: 316 HVGSKEEVYAGGSRGSV 332
>At1g29940.1 68414.m03658 DNA-directed RNA polymerase family protein
similar to SP|P22138 DNA-directed RNA polymerase I 135
kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit
2) {Saccharomyces cerevisiae}; contains Pfam profiles
PF04563; RNA polymerase beta subunit, PF04560: RNA
polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2
domain 2, PF04565: RNA polymerase Rpb2 domain 3,
PF00562: RNA polymerase Rpb2 domain 6
Length = 1114
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 325 YEIYPYFFVDSHVINKAFMMKMTKAGTDPVLMNYYGINV 441
Y PY + V NK MK + GTDPV++++ +++
Sbjct: 774 YPDEPYCSIYDEVTNKTRHMK--RKGTDPVIVDFVSVDM 810
>At1g19570.1 68414.m02437 dehydroascorbate reductase, putative
similar to GB:BAA90672 from (Oryza sativa)
Length = 213
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 122 SPRGSMPILKVSMNFVTTSD 63
SP+G +P+LK+ +VT SD
Sbjct: 55 SPQGKVPVLKIDDKWVTDSD 74
>At1g19550.1 68414.m02435 dehydroascorbate reductase, putative
similar to dehydroascorbate reductase [Arabidopsis
thaliana] gi|10952514|gb|AAG24946
Length = 153
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 122 SPRGSMPILKVSMNFVTTSD 63
SP+G +P+LK+ +VT SD
Sbjct: 19 SPQGKVPVLKIDDKWVTDSD 38
>At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 852
Score = 26.6 bits (56), Expect = 7.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 33 AGGKHGQVLEIRCCYEIHGDLQN 101
A K+G +LE+R C I+ D++N
Sbjct: 638 ARSKYGSLLEVRQCLAIYQDMRN 660
>At3g47040.1 68416.m05108 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 636
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 303 DAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAE 172
DA++ +E IYE P F ++ +GE YAE
Sbjct: 478 DAIKEAVGDKTEVIYEKTPSEETLASLQRFSYAIVAVGETPYAE 521
>At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 325
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 100 MGMLPRGEVFVHTNALQMEQAVKVFRILYFAKDY-DYF 210
+G+ +V+ ++ Q E+ V + + YF DY DYF
Sbjct: 151 LGLEDEQDVYGEASSSQFEEVVPFYGLPYFRDDYNDYF 188
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,703,358
Number of Sequences: 28952
Number of extensions: 201594
Number of successful extensions: 542
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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