Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K06
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    28   0.77 
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   1.8  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    26   3.1  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   4.1  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   7.2  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   7.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.5  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    25   9.5  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
 Frame = +2

Query: 71  NTVLRLHPHVCFNRKYFNILKEIGKNDGGVLEHS---GAMFIDSKINVYEQFK---QDVQ 232
           N  L+++PH   N ++ N  K IG+  G  + H     A F+ S   +  Q K   QD++
Sbjct: 484 NYTLQINPHSGINPEHLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDME 543

Query: 233 NTGVSEVNELPWXXXXXXXXXINDFVRSATHEAIDEIVT 349
           +        L W         + D   S       E+VT
Sbjct: 544 SMDAEYYRSLVWILDNDITGVL-DLTFSVEDNCFGEVVT 581


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 383 IDALYFKGNWRVLFPYENTESSPFYNTKGNQIGNV 487
           +D+L+F  N  V      TE SPF ++ G QI  +
Sbjct: 174 VDSLFFLNNDSVAISGNFTEISPFSSSNGPQIAKL 208


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 299 NDFVRSATHEAIDE--IVTPSELDGVLLVLIDALYFKG 406
           +D  ++A  E I+E  +  P E D V+L   DA++ KG
Sbjct: 164 SDEKQNAYEEKIEERILANPDESDDVMLAARDAIFSKG 201


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 240 PVFWTSCLNC 211
           PVFW SCL+C
Sbjct: 229 PVFWISCLSC 238


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 337 INSFVSCRSNEIVYCSRG 284
           +NS VSC+S  I+ C +G
Sbjct: 166 VNSDVSCKSQHILDCGKG 183


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 337 INSFVSCRSNEIVYCSRG 284
           +NS VSC+S  I+ C +G
Sbjct: 166 VNSDVSCKSQHILDCGKG 183


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 21/79 (26%), Positives = 33/79 (41%)
 Frame = -2

Query: 348  VTISSIAS*VADLTKSFIXXXXXXXXSQGNSLTSETPVFWTSCLNCS*TFIFESMNIAPE 169
            V+ SS ++    L    +         Q  S  SET +F  S +    TF+ + +++ PE
Sbjct: 1964 VSFSSASTEPRKLALDIVQTFINWQRKQNESENSETTLFSNSHIEAILTFLIKFLSLFPE 2023

Query: 168  CSKTPPSFLPISFKILKYF 112
                P    P+S K L  F
Sbjct: 2024 ----PVEENPLSKKGLSLF 2038


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 370 HSIQFTRCYYFINSFVSCRSNEIVYCSRGSRVIVPR*FINFRNSCILDV 224
           H    TRC  +I+  +S + N++   S  +R I+P     F    +L+V
Sbjct: 149 HDTLGTRCDPYIDKLISGKDNDLHCHSNLTRAIMPYGLTEFDVHDVLNV 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,944
Number of Sequences: 5004
Number of extensions: 44800
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)