Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K06
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0014 - 7352619-7352918,7353173-7353418 50 9e-07
11_02_0012 - 7346282-7347136,7347234-7347593 50 2e-06
11_02_0011 - 7337618-7338496,7338596-7338991 46 3e-05
01_06_0824 - 32243495-32244319,32244449-32244859 43 1e-04
11_01_0771 + 6453130-6454488 42 3e-04
01_01_1152 + 9170628-9171899 42 3e-04
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 42 4e-04
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 38 0.004
11_01_0767 + 6438648-6438809,6439146-6440000 36 0.028
11_01_0750 - 6315126-6315896,6316371-6316784 33 0.15
11_06_0181 + 20985960-20987825,20987904-20989169 29 1.8
05_03_0488 - 14651532-14652265,14652404-14653988 29 2.4
04_03_0991 - 21500143-21500799,21500834-21501172 28 4.2
05_04_0193 + 18939869-18939988,18940714-18941012,18941078-189411... 27 7.3
02_04_0367 + 22399785-22399899,22400911-22401102,22401990-224021... 27 9.7
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 50.4 bits (115), Expect = 9e-07
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 296 INDFVRSATHEAIDEIVTPSELDGVL-LVLIDALYFKGNWRVLFPYENTESSPFYNTKGN 472
IN++V AT++ I EI+ + + LVL++A+YFKG W FP E+T + F+ G+
Sbjct: 90 INEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKWSDPFPRESTTTGKFHRLDGS 149
Query: 473 QIGNVNLM 496
+ NV M
Sbjct: 150 SV-NVRFM 156
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 296 INDFVRSATHEAIDEIVTPSELDG-VLLVLIDALYFKGNWRVLFPYENTESSPFYNTKGN 472
IN +V AT++ I EI+ + G LVL++A+YFKG W FP E T + F+ G+
Sbjct: 128 INKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGKFHRLDGS 187
Query: 473 QI 478
+
Sbjct: 188 SV 189
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 296 INDFVRSATHEAIDEIVTPSELD-GVLLVLIDALYFKGNWRVLFPYENTESSPFYNTKGN 472
IN +V AT++ I EI+ + LVL++A+YFKG W FP +T + F+ G+
Sbjct: 140 INKWVSKATNKLIPEILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGKFHRLDGS 199
Query: 473 QI 478
+
Sbjct: 200 SV 201
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 43.2 bits (97), Expect = 1e-04
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 10/168 (5%)
Frame = +2
Query: 5 LSAWAILSTLSFGAAEETFDEINTVLR-----LHPHVCFNRKYFNILKEIGKND---GGV 160
LS A L+ L GA ET D+I L H + + ++ + G D G
Sbjct: 39 LSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGPGDDRGGPK 98
Query: 161 LEHSGAMFIDSKINVYEQFKQDVQNTGVSEVNELPWXXXXXXXXX-INDFVRSATHEAID 337
+ + +++D+ + + + + V + +E + + IN++ SAT I
Sbjct: 99 VRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFESATAGRIK 158
Query: 338 EIVTPSELDGVL-LVLIDALYFKGNWRVLFPYENTESSPFYNTKGNQI 478
+ + +D VL +ALYFKG+W F +T FY G +
Sbjct: 159 DFLPKDAVDRATPAVLGNALYFKGDWESKFDARSTSDDVFYLPDGGHV 206
>11_01_0771 + 6453130-6454488
Length = 452
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 296 INDFVRSATHEAIDEIVTPSELDG-VLLVLIDALYFKGNWRVLFPYENTESSPFYNTKG 469
IN + R AT + I +++ P + +VL +A+YFKG W F +TE PFY G
Sbjct: 177 INAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKGKWDRPFNESDTERKPFYRHDG 235
>01_01_1152 + 9170628-9171899
Length = 423
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 296 INDFVRSATHEAIDEIVTPSELDG-VLLVLIDALYFKGNWRVLFPYENTESSPFYNTKGN 472
+N FV AT I +++ P+ +D ++VL +A++FKG W + F T +PF+ G
Sbjct: 163 VNAFVSDATEGLIRDVLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFHLLDGG 222
Query: 473 QI 478
+
Sbjct: 223 AV 224
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 296 INDFVRSATHEAIDEIVTPSELD-GVLLVLIDALYFKGNWRVLFPYENTESSPFYNTKGN 472
+N +V T I I TP ++ LVL +ALYFKG W F TE F+ G
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWAEKFDVSKTEDGEFHLLDGE 528
Query: 473 QI 478
+
Sbjct: 529 SV 530
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 296 INDFVRSATHEAIDEIVTPSELDGVL-LVLIDALYFKGNWRVLFPYENTESSPFYNTKGN 472
+N +V T I EI+ P +D LVL +ALYFKG W F T+ F+ G
Sbjct: 217 VNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFHLLDGK 276
Query: 473 QI 478
+
Sbjct: 277 SV 278
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 296 INDFVRSATHEAIDEIVTPSELDGVL-LVLIDALYFKGNWRVLFPYENTESSPFYNTKGN 472
+N +V T I EI+ P +D LVL +ALYFKG W F T+ F G
Sbjct: 9 VNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFRLLDGK 68
Query: 473 QI 478
+
Sbjct: 69 SV 70
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 35.5 bits (78), Expect = 0.028
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 296 INDFVRSATHEAIDEIVTP-SELDGVLLVLIDALYFKGNWRVLFPYENTESSPFYNTKGN 472
IN +V AT I E++ P S+ V+ +A+YFKG W F +T F G+
Sbjct: 62 INAWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEWLAPFDKSDTAEREFRRLDGS 121
Query: 473 QI 478
+
Sbjct: 122 SV 123
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 33.1 bits (72), Expect = 0.15
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
Frame = +2
Query: 125 ILKEIGKNDGGVLEHSGAMFIDSKINVYEQFKQDVQNTGVSEVNELPWXXXXXXX-XXIN 301
+L++ + G L +G ++ D+ ++ +F N S + + IN
Sbjct: 88 VLRDRSTSGGPRLAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQIN 147
Query: 302 DFVRSATHEAIDEIVTPSELD-GVLLVLIDALYFKGNWRVLFPYENTESSPFYNTKGNQI 478
+V+ +T + ++ +D LVL ALYF+G W T FY G +
Sbjct: 148 SWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTEQKFYCLDGTSV 207
>11_06_0181 + 20985960-20987825,20987904-20989169
Length = 1043
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -2
Query: 237 VFWTSCLNCS*TFIFESMNIAPECSKTPPSFLPI 136
VFWT C +C F++ N CS F I
Sbjct: 167 VFWTICPHCQKRFLYYQRNFLARCSDCGKRFFAI 200
>05_03_0488 - 14651532-14652265,14652404-14653988
Length = 772
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 182 FIDSKINVYEQFK-QDVQNTGVSEVNELPW 268
F+D+ +N E FK QDV + ++ +N +PW
Sbjct: 387 FVDAILNGLEVFKLQDVNKSNLAGMNPIPW 416
>04_03_0991 - 21500143-21500799,21500834-21501172
Length = 331
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 2 GLSAWAILSTLSFGAAEETFDEINTVLRLHPHVCFNRKYFNILKEIGKNDGGVLEHSGAM 181
GL A + ++F + +TF VL V F + F KE+G GG ++H+
Sbjct: 168 GLLATGEGADVTFEVSGKTFAAHRLVLAARSPV-FRAELFGPSKELGATTGGAVDHTAIR 226
Query: 182 FIDSKINVYE 211
D + +E
Sbjct: 227 IDDMEARDFE 236
>05_04_0193 +
18939869-18939988,18940714-18941012,18941078-18941186,
18941874-18941999,18942178-18942218,18942614-18942744,
18943218-18943291,18944215-18944450,18944543-18944863,
18945023-18945086
Length = 506
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 329 AIDEIVTPSEL-DGVLLVLIDALYFKGNWRVLFPYENTE 442
A+ EI EL D ++ LIDA +KGN ++F + T+
Sbjct: 63 ALREIKLLKELKDSNIIELIDAFPYKGNLHLVFEFMETD 101
>02_04_0367 +
22399785-22399899,22400911-22401102,22401990-22402117,
22402229-22402384,22402948-22403206,22403762-22403836,
22404288-22404610,22405041-22405274,22405355-22405542,
22405734-22405869,22405963-22406071,22406988-22407090,
22407188-22407374,22407467-22407565,22407666-22407724,
22408581-22408686,22408798-22408962
Length = 877
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 398 STKHRSKLRALHPIHSVL 345
ST HRS+ + LHP+H ++
Sbjct: 616 STSHRSQNKQLHPLHQMI 633
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,591,920
Number of Sequences: 37544
Number of extensions: 254745
Number of successful extensions: 517
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -