Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K06
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      52   2e-07
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      47   9e-06
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      37   0.012
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)                  31   0.61 
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)               28   4.3  
SB_51515| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_55288| Best HMM Match : TLD (HMM E-Value=0.00092)                   27   7.5  
SB_51296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
 Frame = +2

Query: 41  GAAEETFDEINTVLRLHPHVCFNRKYFNILKEIG---KNDGGVLEHSGA--MFIDSKINV 205
           GA  ET DE+ T +    H           KE+     N G   E S A  +F+    ++
Sbjct: 5   GARGETADEMATAMHWEGHKPMLPSKHQEHKELSVALNNPGATNEMSIANNLFLQKDFSI 64

Query: 206 YEQFKQDVQNTGVSEVNELPWXXXXXXXXX-INDFVRSATHEAIDEIVTPSELDGVL-LV 379
            ++F    Q    ++++ + +          +N +V   T + I +++ P   + +  L 
Sbjct: 65  LKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKICDLIAPGVFNMLTRLT 124

Query: 380 LIDALYFKGNWRVLFPYENTESSPFYNTKGNQIGNVNLMYVTGTF 514
           L++A+YFKG W   F  E++ SS F  T  N++  V +M+    F
Sbjct: 125 LVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEV-EVEMMFQKSKF 168


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
 Frame = +2

Query: 113 KYFNILKEIG--KNDGGVLEHSGAMFIDSKINVYEQFKQDVQNTGVSEVNELPWXXXXXX 286
           K+ + L+ +    +DG  +  +  +F      + E+FK+  + +  +E+  + +      
Sbjct: 69  KFHDFLQALNASNSDGNQILMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNG 128

Query: 287 XX-XINDFVRSATHEAIDEIVTPSELD-GVLLVLIDALYFKGNWRVLFPYENTESSPFYN 460
               +N +V   T + I  ++     +   +L L++A+YFKG+W   F    T+S  F  
Sbjct: 129 ARDTVNRWVEQKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKT 188

Query: 461 TKGNQIGNVNLMYVTGTFNMTSVEQIG 541
           T   +I  V  MY +  F       +G
Sbjct: 189 TPSQEI-QVQFMYQSSEFRYLESSTLG 214


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +2

Query: 296 INDFVRSATHEAIDEIVTPSELDGVL-LVLIDALYFKGNWRVLFPYENTESSPFY 457
           +N +V   T   I E++    ++ +  L++++A+YFKG W+  F  ENT  + F+
Sbjct: 101 VNAWVHQQTKGNIKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFF 155


>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
          Length = 885

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 201 FIFESMNIAPECSKTPPSFLPISFKILKYFLLK---HTCGCS 85
           F  E+   A  C K  P+FL  S+K+L YF  K   + CG S
Sbjct: 652 FANEAEEKAQHCLKAEPAFLEKSWKVLDYFSFKSVRNLCGAS 693


>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
          Length = 511

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 132 FKILKYFLLKHTCGC 88
           +++++YFLL H CGC
Sbjct: 166 WRLMRYFLLTHLCGC 180


>SB_51515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 132 FKILKYFLLKHTCGCSLSTVLISSKVSSAA 43
           +++++YFLL H CG S  T    S + S A
Sbjct: 98  WRLMRYFLLTHLCGISHRTWCTLSTICSDA 127


>SB_55288| Best HMM Match : TLD (HMM E-Value=0.00092)
          Length = 349

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 132 FKILKYFLLKHTCGCSLSTVL 70
           +++++YFLL H CG   S +L
Sbjct: 62  WRLMRYFLLTHLCGLESSEIL 82


>SB_51296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 138 ISFKILKYFLLKHTCGCS 85
           + +++++YFLL H CG S
Sbjct: 64  VEWRLMRYFLLTHLCGIS 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,193,392
Number of Sequences: 59808
Number of extensions: 305116
Number of successful extensions: 738
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)