Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K05
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    25   5.5  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    25   5.5  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    25   7.3  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   7.3  

>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 122 RSDSLKQTDRQNILNCSYVIGTVYIIRAHVFSKKMFFANTTGFNKNSYYMLKF 280
           ++  +K  +  +I+ C  V+    +I A VFS K+   N  GF   S+Y   F
Sbjct: 78  KAPRIKTKNLISIIFCE-VVAIYSLIIAIVFSAKINDINPAGFYTKSHYYTGF 129


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 152 QNILNCSYVIGTVYIIRAHVFSKKMFFANTTGFNKN 259
           QN+L CSY  GT  I+  +  SK+    +   F+ N
Sbjct: 351 QNLLRCSYGFGTT-ILDEYGESKRKTIGSEATFSSN 385


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 352 VRDRRPRRTVESPHSWRCPIAH 417
           VR+  PRR VE   +W+  + H
Sbjct: 73  VREESPRRPVEHERNWQPELKH 94


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 56  SVKK*PNSAV*IQLSAKKNWSNRSDSLKQTDRQNI 160
           SV + P+S     L     W N +D+  Q D Q++
Sbjct: 147 SVSRPPSSMSRTNLDVSSRWDNTADNDSQIDAQDL 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,484
Number of Sequences: 5004
Number of extensions: 40284
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)