Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K05
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0173 + 13086309-13086576,13088818-13088906 28 3.1
11_03_0007 + 8892616-8892760,8893073-8893206,8893496-8893695,889... 27 5.4
05_04_0360 - 20617865-20619799 27 7.2
02_03_0177 - 16017650-16019599 27 7.2
11_06_0380 + 22937941-22937984,22939375-22941481 27 9.5
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995... 27 9.5
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626... 27 9.5
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 27 9.5
>09_03_0173 + 13086309-13086576,13088818-13088906
Length = 118
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 334 VLCYPMVRDRRPRRTVESPHSWRCPIAH 417
VL ++DR+ ++ P W+CP+ H
Sbjct: 10 VLVRKAMKDRKKKKGPTKPTPWKCPLCH 37
>11_03_0007 +
8892616-8892760,8893073-8893206,8893496-8893695,
8893809-8894090,8894185-8894243,8894345-8894381,
8894501-8894723,8894818-8894964,8895845-8895892
Length = 424
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +2
Query: 158 ILNCSYVIGTVYIIRAHVFSKKMFFANTTGFNKNSYYMLKFN 283
++ ++IG + + A + SK F TG+ +Y++ +F+
Sbjct: 104 VIAALWLIGGIIFVGALLISKIFFAKRNTGYGDMNYFLARFH 145
>05_04_0360 - 20617865-20619799
Length = 644
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 342 LSDGAGPTSPPNSRVATLLALSN 410
+S+ AGPT+PP + LALSN
Sbjct: 214 ISNVAGPTNPPTAACTLGLALSN 236
>02_03_0177 - 16017650-16019599
Length = 649
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 128 QNGLTNFFWQIAEFIPRYLAT 66
QNGL N+ Q+ E +PRY T
Sbjct: 441 QNGLVNYATQVFEQMPRYRCT 461
>11_06_0380 + 22937941-22937984,22939375-22941481
Length = 716
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 279 LIGIFELIFMMN*K*YGNRIVLSDGAGPTSPPNSRVATLLALSNSTLCYF 428
L+ L+F++ YG RI A +P +S +A+L A + S + F
Sbjct: 153 LVAPMVLVFVLGAVKYGERIWALRSAAARAPGSSSIASLAARTYSNIASF 202
>04_03_0036 -
9950353-9950379,9950753-9950791,9951021-9951194,
9951287-9951415,9951782-9952012,9952655-9952732,
9953035-9953055,9953790-9953855,9953935-9954015,
9954148-9954920,9955461-9955654,9956723-9956817,
9958190-9958219,9958334-9958453,9959185-9959262,
9959428-9959505,9960459-9960488,9960614-9960739,
9961239-9961379,9963416-9963532,9963619-9963670,
9963759-9963890,9964668-9964720,9964816-9964911,
9965255-9965260,9965416-9965561,9966494-9966629,
9966885-9967038,9968017-9968154,9968268-9968614
Length = 1295
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +3
Query: 348 DGAGPTSPPNSRVATLLALSNSTL---CYFNIH 437
DG G T P +S A L +S + L CY+ +H
Sbjct: 86 DGGGGTQPSSSSGAVLDGISGARLELVCYYRLH 118
>03_02_0649 -
10162202-10162366,10162455-10162533,10162614-10162670,
10162741-10162847,10163365-10163580,10163690-10163734,
10164100-10164258,10164714-10164818,10164902-10165084,
10165490-10165546,10165625-10165720,10166970-10167104,
10167188-10167262,10167380-10167479,10167682-10167842,
10167921-10168068,10168706-10169111,10169794-10169860,
10169953-10170162,10170570-10170711,10170809-10170870,
10170965-10171037,10171876-10171985,10172087-10172227
Length = 1032
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/62 (22%), Positives = 28/62 (45%)
Frame = +2
Query: 107 KNWSNRSDSLKQTDRQNILNCSYVIGTVYIIRAHVFSKKMFFANTTGFNKNSYYMLKFNW 286
K WS+ L Q + + + SY + TV SKK + +++ + Y+ + W
Sbjct: 127 KEWSDVFSVLAQQLQTSDVFTSYQVSTVLFRSLKKLSKKRLAFDQRNYSEITVYLFDYIW 186
Query: 287 DI 292
++
Sbjct: 187 NL 188
>02_04_0157 +
20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 201 VRMYLVKKCFLQTQLVSTKIHTIC 272
VR YL K F+Q +L +T++ +C
Sbjct: 758 VRSYLAHKHFIQLRLSATQLQAVC 781
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,548,200
Number of Sequences: 37544
Number of extensions: 215968
Number of successful extensions: 391
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -