Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K05
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13363| Best HMM Match : COG2 (HMM E-Value=0.081)                    31   0.60 
SB_48344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_39223| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_21519| Best HMM Match : PAN (HMM E-Value=8.6e-07)                   28   4.2  
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_58984| Best HMM Match : PAN (HMM E-Value=1.2e-07)                   27   7.4  
SB_41938| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  

>SB_13363| Best HMM Match : COG2 (HMM E-Value=0.081)
          Length = 411

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 146 LFVSGNQNGLTNFFWQIAEFIPRYLATFL 60
           +F+S  +NGL   + +I EFIP+Y +  L
Sbjct: 325 VFLSDPENGLREIYTKILEFIPKYCSNML 353


>SB_48344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 334 VLCYPMVRDRRPRRTVESPHSWRCP 408
           + CY M RDRR    V   H  +CP
Sbjct: 50  IRCYSMARDRRMSLPVRESHRKKCP 74


>SB_39223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 168 QFKMFCLSVCFRESERFDQFFLADS*IYTALFG 70
           Q + FCLS+ FR+++R      AD   + A FG
Sbjct: 58  QSEFFCLSIAFRKTDRMCMLKNADRHTHVADFG 90


>SB_21519| Best HMM Match : PAN (HMM E-Value=8.6e-07)
          Length = 236

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 168 QFKMFCLSVCFRESERFDQFFLADS*IYTALFG 70
           Q + FCLS+ FR+++R      AD   + A FG
Sbjct: 55  QSEFFCLSIAFRKTDRMCMLKNADRHTHAADFG 87


>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 227 FFANTTGFNKNSYYMLKFN 283
           F   TTGF KN Y + KFN
Sbjct: 489 FMTRTTGFGKNLYLVQKFN 507


>SB_58984| Best HMM Match : PAN (HMM E-Value=1.2e-07)
          Length = 149

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 168 QFKMFCLSVCFRESERFDQFFLADS*IYTALFG 70
           Q + FCLS+ FR+++R      AD   + A FG
Sbjct: 58  QSEFFCLSIAFRKNDRMCMLKDADRHTHRADFG 90


>SB_41938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 168 QFKMFCLSVCFRESERFDQFFLADS*IYTALFG 70
           Q + FCLS+ FR+++R      AD   + A FG
Sbjct: 80  QSEFFCLSIAFRKNDRMCMLKDADRHTHRADFG 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,997,971
Number of Sequences: 59808
Number of extensions: 279687
Number of successful extensions: 480
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)