Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K05
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04160.1 68414.m00406 myosin family protein contains Pfam pro...    28   2.6  
At2g42690.1 68415.m05285 lipase, putative similar to lipase [Dia...    28   3.4  
At5g22240.1 68418.m02589 ovate family protein 60% similar to ova...    27   7.9  
At5g12080.2 68418.m01415 mechanosensitive ion channel domain-con...    27   7.9  
At5g12080.1 68418.m01414 mechanosensitive ion channel domain-con...    27   7.9  

>At1g04160.1 68414.m00406 myosin family protein contains Pfam
           profiles: PF02736 myosin N-terminal SH3-like domain,
           PF00063 myosin head (motor domain), PF00612 IQ
           calmodulin-binding motif, PF01843: DIL domain
          Length = 1500

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 201 VRMYLVKKCFLQTQLVSTKIHTIC 272
           VR YL +K F+Q ++ +T+I  +C
Sbjct: 746 VRSYLAQKTFIQLRISATQIQAVC 769


>At2g42690.1 68415.m05285 lipase, putative similar to lipase
           [Dianthus caryophyllus] GI:4103627; contains Pfam
           profile PF01764: Lipase
          Length = 412

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 92  QLSAKKNWSNRSDSLKQTDRQNILNCSYVIGTVYIIRAHVFSKKMFFANTTGFNKNSYY 268
           +L   KNW    D L Q+ R+ IL C       Y   A V  +   +   + + K+S++
Sbjct: 10  ELLGSKNWDTILDPLDQSLRELILRCGDFCQATY--DAFVNDQNSKYCGASRYGKSSFF 66


>At5g22240.1 68418.m02589 ovate family protein 60% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 196

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 314 LKIIW*PYCVIRWCGTDVPAEQSSRHTPG 400
           LK I+ P  +   CG+ VP    S +TPG
Sbjct: 51  LKTIFKPIFMACGCGSTVPPSSHSHYTPG 79


>At5g12080.2 68418.m01415 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 734

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +3

Query: 228 FLQTQLVSTK--IHTIC*NLIGIFELIFMMN*K*YGNRIVLSDGAGPTSPPNSRVATLLA 401
           F  TQLV+    I + C NL      +F+M+    G+R V+   A      N      L 
Sbjct: 543 FFSTQLVALAFIIGSTCKNLFESIVFVFVMHPYDVGDRCVVDGVAMLVEEMNLLTTVFLK 602

Query: 402 LSNSTLCYFN 431
           L+N  + Y N
Sbjct: 603 LNNEKVYYPN 612


>At5g12080.1 68418.m01414 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 734

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +3

Query: 228 FLQTQLVSTK--IHTIC*NLIGIFELIFMMN*K*YGNRIVLSDGAGPTSPPNSRVATLLA 401
           F  TQLV+    I + C NL      +F+M+    G+R V+   A      N      L 
Sbjct: 543 FFSTQLVALAFIIGSTCKNLFESIVFVFVMHPYDVGDRCVVDGVAMLVEEMNLLTTVFLK 602

Query: 402 LSNSTLCYFN 431
           L+N  + Y N
Sbjct: 603 LNNEKVYYPN 612


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,771,751
Number of Sequences: 28952
Number of extensions: 190726
Number of successful extensions: 310
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)