Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_K04
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 98 6e-21
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21) 33 0.19
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 33 0.26
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 31 0.78
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 31 1.0
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) 29 3.2
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_21157| Best HMM Match : Laminin_EGF (HMM E-Value=0.036) 28 7.3
SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002) 27 9.7
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 97.9 bits (233), Expect = 6e-21
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
Frame = +1
Query: 73 PSLKDLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFD--GIEKF 246
PS +D+ + A D +++++ F+ S L+ V+T EK LPSA + E + L D + F
Sbjct: 627 PSQEDIKEEAVDSRAEVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASF 686
Query: 247 DATSLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIESFDPTKLKHTETCEKNPLPTKDVI 426
DA+ LKH E QEKNPLP KD I E + + +++FD +KLKH +T EKNPLP I
Sbjct: 687 DASKLKHVEVQEKNPLPTKDDITTESTETR--AEVKTFDHSKLKHVQTEEKNPLPDAKTI 744
Query: 427 EQEKSA 444
QEK++
Sbjct: 745 AQEKAS 750
Score = 91.5 bits (217), Expect = 5e-19
Identities = 50/110 (45%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Frame = +1
Query: 112 KSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNP 291
+++++ F S L+ V+T EK LP+ + +A EK + + F G+E F LKH ET EKNP
Sbjct: 451 RAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNP 509
Query: 292 LPDKDAIEAE--KEKNKFLNGIESFDPTKLKHTETCEKNPLPTKDVIEQE 435
LPD I AE E + + FD +KLKH ET EK +PTKDVIE E
Sbjct: 510 LPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 88.2 bits (209), Expect = 5e-18
Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Frame = +1
Query: 88 LPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKH 267
+PK D +S++ F+ + L+ V T EK ++PS ED+ E ++ FD + LKH
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKH 653
Query: 268 TETQEKNPLPDKDAIEAEKEKNKF--LNGIESFDPTKLKHTETCEKNPLPTKDVIEQEKS 441
ET EKNPLP ++ E ++ + SFD +KLKH E EKNPLPTKD I E +
Sbjct: 654 VETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTEST 713
Score = 83.8 bits (198), Expect = 1e-16
Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Frame = +1
Query: 115 SQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDATSLKHTETQEKN 288
S +E F + L+ V+T EK LP A+++ E + L D E KFD + LKH ET+EK
Sbjct: 489 SGVEVFQKNKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKV 548
Query: 289 PLPDKDAIEAEKEKNKFLNGIESFDPTKLKHTETCEKNPLPTKDVIEQE 435
+P KD IEAE ++ ++SFD +KLKH T EKNPLPT + +E
Sbjct: 549 VMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVVTQEKNPLPTPQTLHEE 595
Score = 75.4 bits (177), Expect = 4e-14
Identities = 40/96 (41%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Frame = +1
Query: 157 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDAIEAEKEKNK 336
DT ++I P +E + K + KFDA +LKH +T+EKN LP + I+ E + ++
Sbjct: 389 DTPQQI-WPGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDE 447
Query: 337 FLN--GIESFDPTKLKHTETCEKNPLPTKDVIEQEK 438
F + ++SF+ +KL+H ET EKN LPTKD I EK
Sbjct: 448 FPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK 483
>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
Length = 900
Score = 33.1 bits (72), Expect = 0.19
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 151 DVDTNEKIVLPSAEDVATEKTQKSLFDG-IEKFDATSLKHTETQEKNPLPDKDAIEAEKE 327
DV + P+ A EKT K + DG +EK+ + +T + L D D E+E
Sbjct: 341 DVIGKPPAIPPAQVQAAEEKTPKDIIDGLLEKYKEIGSQMADTSADDGLDDDD---VEEE 397
Query: 328 KNKFLNGIESFDPTKLK 378
+ L+ + F TK K
Sbjct: 398 DDDVLDEADRFRDTKRK 414
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/75 (28%), Positives = 30/75 (40%)
Frame = +1
Query: 79 LKDLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATS 258
L DL +V +LKS+ EG CL D++ + DV E I + +
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKEHENLKSAVSISEGELLK 1183
Query: 259 LKHTETQEKNPLPDK 303
K+T EK K
Sbjct: 1184 FKNTLQSEKEEFEKK 1198
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +1
Query: 244 FDATSLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIESFDPTKLKHTETCEKNPLPTKDV 423
+D K E PD+D +E E+E NG+ES D K + PT DV
Sbjct: 839 YDVKQRKRLEQHASYEAPDEDEMEIERE---LQNGLESGDEDDTKADAQRSETNSPTLDV 895
Query: 424 IEQE 435
Q+
Sbjct: 896 ETQQ 899
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 217 KSLFDGIEKFDATSLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIESFDPTKLKHT--ET 390
KS+F + S+ TET+E NP D +AE+ + G S T+ K T ET
Sbjct: 276 KSVFKRNRPTEPASVPSTETKEANPNVTADTKQAEQNEGSMSEGTTSKTITENKTTNMET 335
Query: 391 CEKNPL 408
K L
Sbjct: 336 LRKEML 341
>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 262 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIESFDPTKLKHTETCEK 399
+HTE + +P P K I+ E +++ + I+ KH+ +CE+
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCER 257
>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
Length = 385
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 178 LPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLP 297
L S D EKT D +E+F + + +H T +KNPLP
Sbjct: 194 LSSRSDHVQEKT-----DRLEQFSSQTGRHINTTKKNPLP 228
>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 217 KSLFDGIEKFDATSLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIESFDPTKLKHT 384
K L+ +E ++ T +Q + + + +E E E L+G ES+DP + T
Sbjct: 1033 KDLYGNVEASTYVTVNITPSQLQTIISGDERMEVEPESTFPLDGSESYDPDDIYPT 1088
>SB_21157| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)
Length = 897
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = +1
Query: 247 DATSLKHTETQEKN-------PLPDKDAIEAEKEKNKFLNGIESFDPTKLKHTETCEKN 402
D TSLK T+++E+N P +D A K + D T LK T++ +KN
Sbjct: 570 DITSLKETQSEERNIAITSMKETPGEDRAIAITSLKKKPGKDRAIDITSLKETQSVDKN 628
>SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Frame = +1
Query: 235 IEKFDATSLKHTETQ--------EKNPLPDKDAIEAEKEKNKFLNGIE 354
I+K DA +L T+ + EK P+ D+D ++ E E + G+E
Sbjct: 294 IDKLDAQALSMTQAEFNKKMFGDEKGPVSDQDRVDGESEPDVTCKGLE 341
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.9 bits (59), Expect = 7.3
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -3
Query: 399 LFASFSVLQLCRVEAFDAVQELIFLFFCFDSIF---VRQRVL-LLGFCMF 262
LF S S L LC + F L +L+ C IF V R L L FC+F
Sbjct: 1841 LFVSLSYLCLCAICIFALSVSLRYLYLCAICIFALSVSLRYLYLCAFCIF 1890
>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
Length = 1725
Score = 27.5 bits (58), Expect = 9.7
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +1
Query: 223 LFDGIEKFDATSLKHTETQEKNPLPDKDAIEAEKEKNKFLNGI-ESFDPTKLK--HTETC 393
LFD I+K DAT L E L D D E + + + G+ E+F+ ++ H
Sbjct: 707 LFDDIDKLDATQLPPKEAFYSR-LNDADISEGDYQHAR---GVWEAFEMKTMRDYHDLYL 762
Query: 394 EKNPLPTKDVIEQEKSA*ITSSY*FNPCNYY 486
E + L DV E ++ +Y +P YY
Sbjct: 763 ESDVLLLADVFESFRNV-CLGNYGLDPAWYY 792
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,267,768
Number of Sequences: 59808
Number of extensions: 413515
Number of successful extensions: 1197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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