Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K04
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.3  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   5.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 107 ISKVNWRDSTRAACETSTQMR 169
           +SK+ WR    A  E  TQ+R
Sbjct: 32  MSKIQWRKPKPAMVEEKTQLR 52


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 235 IEKFDATSLKHTETQEKNPLPD 300
           IE  + TSL  T+  E  PLP+
Sbjct: 653 IETMELTSLLLTKVAEDRPLPE 674


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +1

Query: 103 NDLKSQLEGFNTSCLRDVDTNEKIV 177
           ++LKS L    + C++++ T ++I+
Sbjct: 20  DELKSGLHTVQSVCMKEIGTAQQII 44


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 599 VIMLYVKKKTRLKW 558
           ++M+   KKTRL+W
Sbjct: 345 ILMMRRPKKTRLRW 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,904
Number of Sequences: 438
Number of extensions: 3717
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)