Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K01
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      27   2.9  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   3.8  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    25   6.7  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   6.7  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    25   8.8  

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 475 SEVLATVMSIVVAYVALRNKNKILA*FVDCNSVFFVINQC 594
           +++L T++ I+ AY+AL     ++  FV  + +FF+   C
Sbjct: 255 ADMLMTLVLIISAYIALNAVASVVIAFVFLSLIFFISFIC 294


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
 Frame = +1

Query: 247 DEKPLTAAR--VGENKY-----QVSWTEEPAKARSGVHEINILDEEGWASLRRARR-SDP 402
           D+KP  AA   +G N       QVS   EP KA +   ++N LD+E   ++   ++ S+P
Sbjct: 534 DDKPSPAAAEDIGTNGAIEEIPQVSEVLEPEKAHTTNLQLNALDKEEDLNITTVKQSSEP 593

Query: 403 TA 408
           TA
Sbjct: 594 TA 595


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 448 GSYSGPWVNSEVLATVMSIVVAYVALRNKNK 540
           G+  GPW NS+ L  V+   +  VAL + +K
Sbjct: 48  GTAEGPWNNSQKLELVLGHRLQVVALLSPHK 78


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 425 SNGATVAVGSERRARRSDAQPSSSR 351
           SN  T  +GSERR R  +A   SSR
Sbjct: 157 SNFRTFDIGSERRRRILEASQDSSR 181


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -3

Query: 343 FHELRSGPLLALQSRIPDTYFLQLEPLLMVFH 248
           F+ +++ PLL  ++ +P  YF  +  +  +F+
Sbjct: 183 FYGIQNDPLLCTRTHLPSKYFTSVSWMTQMFY 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,257
Number of Sequences: 5004
Number of extensions: 49885
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)