Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K01
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)            89   2e-18
SB_37522| Best HMM Match : TRAP-delta (HMM E-Value=0.11)               53   2e-07
SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)                28   5.3  
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               28   7.0  
SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_18895| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
          Length = 504

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 43/90 (47%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
 Frame = +1

Query: 178 YITEFSLKCDNPLPENYALYAEVDEKPLTAARVGEN-KYQVSWTEEPAKARSGVHEINIL 354
           ++TEFSL CDN   ++ +LYAEV+ K +   R  +N KYQVSW+EE  +A+SGV+ IN L
Sbjct: 272 FLTEFSLACDNNT-KDVSLYAEVNGKVMPVTRSTDNSKYQVSWSEEHKQAKSGVYTINFL 330

Query: 355 DEEGWASLRRARRSDPTATVAPLLAIQLHH 444
           DEEG+++ R+A+RS  +  + PL  I ++H
Sbjct: 331 DEEGYSNYRKAQRSGGSLDIKPLFTIDINH 360


>SB_37522| Best HMM Match : TRAP-delta (HMM E-Value=0.11)
          Length = 65

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
 Frame = +1

Query: 103 ESCQNPKVEATSFTSLDATVVTQIAYITEFSLKCDNPLPENYALYAEVDEKPLTAARVGE 282
           E C  PK  +TS+TS +  + ++  ++TEFSL CDN   ++ +LYAEV+ K +   R  +
Sbjct: 2   EPCVGPKATSTSYTSTNIFMSSETVFLTEFSLACDNN-AKDVSLYAEVNGKVMPVTRSTD 60

Query: 283 N-KYQ 294
           N KYQ
Sbjct: 61  NSKYQ 65


>SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)
          Length = 825

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 220 ENYALYAEVDEKPLTAARVGENKYQVS---WTEEPAKARSGVHEINILDEEGWASLRRAR 390
           EN A   + +EKP+T  + GE+ + +      E+ AK +     I+   + G+  L ++R
Sbjct: 732 ENSARTQKTEEKPVTRHKKGEDDWPMGINHGKEKQAKEKQTKEVIHTETKNGFTDLEKSR 791

Query: 391 R 393
           R
Sbjct: 792 R 792


>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 434

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 406 ATVAPLLAIQLHHPGSYSGPWVNSEVLATVMSIVVAYVALRNKNKILA*FVD 561
           AT  PL  +  HHPG+   PW    ++  ++  +  Y   R K K    F++
Sbjct: 326 ATCVPL-RLHHHHPGTEVPPWAKF-IIFDIIGTLCCYKCGRKKQKTNVNFIE 375


>SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 390 SLRPDCHCCSITRYSTPSSWQLLWPLG*F-RSSCYGYVYCSCI 515
           S+  + H  + TR  +P  ++L+     F ++ CY Y +CSC+
Sbjct: 71  SISLNLHELAETRIGSPMLFELIEDSHCFTKTECYHYFHCSCL 113


>SB_18895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 328 SGVHEINILDEEGWASLRRARRSDPTATVAPLLAIQ 435
           S  H  N+LD++  AS  R RR+D T+ +AP+  +Q
Sbjct: 65  SATHR-NVLDQD--ASHNRKRRNDLTSRLAPMYQLQ 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,964,100
Number of Sequences: 59808
Number of extensions: 380771
Number of successful extensions: 885
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)