Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_K01
         (621 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69043-1|CAA93157.1|  173|Homo sapiens translocon-associated pro...   122   1e-27
Z68129-2|CAA92215.1|  173|Homo sapiens translocon-associated pro...   122   1e-27
X90583-1|CAA62211.1|  173|Homo sapiens protein ( H.sapiens mRNA ...   122   1e-27
BT007192-1|AAP35856.1|  173|Homo sapiens signal sequence recepto...   122   1e-27
BC003371-1|AAH03371.1|  173|Homo sapiens signal sequence recepto...   122   1e-27
AK026711-1|BAB15535.1|  180|Homo sapiens protein ( Homo sapiens ...    30   5.7  

>Z69043-1|CAA93157.1|  173|Homo sapiens translocon-associated
           protein delta subunit precursor protein.
          Length = 173

 Score =  122 bits (293), Expect = 1e-27
 Identities = 60/171 (35%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
 Frame = +1

Query: 43  MNKIPIVILLTFAYISRGIAESCQNPKVEATSFTSLDATVVTQIAYITEFSLKCDNPLPE 222
           M  +  + LL  + +SR  AE+C  P++  + +T+ DA + T+  +I E SL C N + +
Sbjct: 4   MASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNRV-Q 62

Query: 223 NYALYAEVDEKPLTAARVGE-NKYQVSWTEEPAKARSGVHEINILDEEGWASLRRARRS- 396
           N ALYA+V  K     R  +  +YQVSW+ +   A +G +E+   DEE ++ LR+A+R+ 
Sbjct: 63  NMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNN 122

Query: 397 DPTATVAPLLAIQLHHPGSYSGPWVNSEVLATVMSIVVAYVALRNKNKILA 549
           +  + + PL  + + H G+++GPWV++EVLA  + +V+ Y+A   K+ I A
Sbjct: 123 EDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 173


>Z68129-2|CAA92215.1|  173|Homo sapiens translocon-associated
           protein delta subunit precursor protein.
          Length = 173

 Score =  122 bits (293), Expect = 1e-27
 Identities = 60/171 (35%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
 Frame = +1

Query: 43  MNKIPIVILLTFAYISRGIAESCQNPKVEATSFTSLDATVVTQIAYITEFSLKCDNPLPE 222
           M  +  + LL  + +SR  AE+C  P++  + +T+ DA + T+  +I E SL C N + +
Sbjct: 4   MASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNRV-Q 62

Query: 223 NYALYAEVDEKPLTAARVGE-NKYQVSWTEEPAKARSGVHEINILDEEGWASLRRARRS- 396
           N ALYA+V  K     R  +  +YQVSW+ +   A +G +E+   DEE ++ LR+A+R+ 
Sbjct: 63  NMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNN 122

Query: 397 DPTATVAPLLAIQLHHPGSYSGPWVNSEVLATVMSIVVAYVALRNKNKILA 549
           +  + + PL  + + H G+++GPWV++EVLA  + +V+ Y+A   K+ I A
Sbjct: 123 EDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 173


>X90583-1|CAA62211.1|  173|Homo sapiens protein ( H.sapiens mRNA for
           rat translocon-associated protein delta homolog. ).
          Length = 173

 Score =  122 bits (293), Expect = 1e-27
 Identities = 60/171 (35%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
 Frame = +1

Query: 43  MNKIPIVILLTFAYISRGIAESCQNPKVEATSFTSLDATVVTQIAYITEFSLKCDNPLPE 222
           M  +  + LL  + +SR  AE+C  P++  + +T+ DA + T+  +I E SL C N + +
Sbjct: 4   MASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNRV-Q 62

Query: 223 NYALYAEVDEKPLTAARVGE-NKYQVSWTEEPAKARSGVHEINILDEEGWASLRRARRS- 396
           N ALYA+V  K     R  +  +YQVSW+ +   A +G +E+   DEE ++ LR+A+R+ 
Sbjct: 63  NMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNN 122

Query: 397 DPTATVAPLLAIQLHHPGSYSGPWVNSEVLATVMSIVVAYVALRNKNKILA 549
           +  + + PL  + + H G+++GPWV++EVLA  + +V+ Y+A   K+ I A
Sbjct: 123 EDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 173


>BT007192-1|AAP35856.1|  173|Homo sapiens signal sequence receptor,
           delta (translocon-associated protein delta) protein.
          Length = 173

 Score =  122 bits (293), Expect = 1e-27
 Identities = 60/171 (35%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
 Frame = +1

Query: 43  MNKIPIVILLTFAYISRGIAESCQNPKVEATSFTSLDATVVTQIAYITEFSLKCDNPLPE 222
           M  +  + LL  + +SR  AE+C  P++  + +T+ DA + T+  +I E SL C N + +
Sbjct: 4   MASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNRV-Q 62

Query: 223 NYALYAEVDEKPLTAARVGE-NKYQVSWTEEPAKARSGVHEINILDEEGWASLRRARRS- 396
           N ALYA+V  K     R  +  +YQVSW+ +   A +G +E+   DEE ++ LR+A+R+ 
Sbjct: 63  NMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNN 122

Query: 397 DPTATVAPLLAIQLHHPGSYSGPWVNSEVLATVMSIVVAYVALRNKNKILA 549
           +  + + PL  + + H G+++GPWV++EVLA  + +V+ Y+A   K+ I A
Sbjct: 123 EDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 173


>BC003371-1|AAH03371.1|  173|Homo sapiens signal sequence receptor,
           delta (translocon-associated protein delta) protein.
          Length = 173

 Score =  122 bits (293), Expect = 1e-27
 Identities = 60/171 (35%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
 Frame = +1

Query: 43  MNKIPIVILLTFAYISRGIAESCQNPKVEATSFTSLDATVVTQIAYITEFSLKCDNPLPE 222
           M  +  + LL  + +SR  AE+C  P++  + +T+ DA + T+  +I E SL C N + +
Sbjct: 4   MASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNRV-Q 62

Query: 223 NYALYAEVDEKPLTAARVGE-NKYQVSWTEEPAKARSGVHEINILDEEGWASLRRARRS- 396
           N ALYA+V  K     R  +  +YQVSW+ +   A +G +E+   DEE ++ LR+A+R+ 
Sbjct: 63  NMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNN 122

Query: 397 DPTATVAPLLAIQLHHPGSYSGPWVNSEVLATVMSIVVAYVALRNKNKILA 549
           +  + + PL  + + H G+++GPWV++EVLA  + +V+ Y+A   K+ I A
Sbjct: 123 EDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 173


>AK026711-1|BAB15535.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23058 fis, clone LNG03818. ).
          Length = 180

 Score = 30.3 bits (65), Expect = 5.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 406 QSGRSDERGGVTPNPPHPGC*FHELRSGP 320
           +SG   E+GG  P+PP P   +H   +GP
Sbjct: 73  ESGLHPEQGGAGPSPPSPSPPWHTREAGP 101


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,540,091
Number of Sequences: 237096
Number of extensions: 1934162
Number of successful extensions: 12677
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12667
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)